RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 EPS8Q12929 822 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 DUSP28Q4G0W2 176 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 METRNLQ641Q3 311 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 PLEKHH3Q7Z736 793 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 RAB11FIP4Q86YS3 637 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 ADGRG5Q8IZF4 528 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 METTL25Q8N6Q8 603 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 RFWD2Q8NHY2 731 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 FAM136AQ96C01 138 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 SAAL1Q96ER3 474 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 VPS50Q96JG6 964 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 ZSWIM1Q9BR11 485 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 HERC2P3Q9BVR0 1158 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 GOLGA2P5Q9HBQ8 144 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.3□□□□□ -1.4
SCFD1-208ENST00000553278 KCND2Q9NZV8 630 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 HCN3Q9P1Z3 774 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 ZHX1Q9UKY1 873 aaPredicted RBP6.3□□□□□ -1.4
SCFD1-208ENST00000553278 SARDHQ9UL12 918 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 SLC12A4Q9UP95 1085 aa6.3□□□□□ -1.4
SCFD1-208ENST00000553278 A0A1B0GTL3 188 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 NPIPB15A6NHN6 443 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 AGAP14A8MT82 685 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 DIRC3C9JPN6 131 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 MASP2O00187 686 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 PSMD9O00233 223 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 RFXAPO00287 272 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 ADRB2P07550 413 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 JUNBP17275 347 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 NNMTP40261 264 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 RPL15P61313 204 aaKnown RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 IFI35P80217 286 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 KCNJ12Q14500 433 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 SSPNQ14714 243 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 NAA25Q14CX7 972 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 RASA2Q15283 850 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 TBCCQ15814 346 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 CD300EQ496F6 205 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 AASDHQ4L235 1098 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 RUNDC3AQ59EK9 446 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 ZNF766Q5HY98 468 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 SLC9A4Q6AI14 798 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 PRPF39Q86UA1 669 aaKnown RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 P3H2Q8IVL5 708 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 ULK2Q8IYT8 1036 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 FAM109AQ8N4B1 249 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 SUPT20HQ8NEM7 779 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 TNIP2Q8NFZ5 429 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 ATG4AQ8WYN0 398 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 NPIPB3Q92617 1050 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 CNDP2Q96KP4 475 aaKnown RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 LRRC37BQ96QE4 947 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 NR1H4Q96RI1 486 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 NEU1Q99519 415 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 DPCDQ9BVM2 203 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 FTOQ9C0B1 505 aaKnown RBP eCLIP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 PDE11AQ9HCR9 933 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 SEMA4BQ9NPR2 832 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 ZDHHC7Q9NXF8 308 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 CNOT6Q9ULM6 557 aaKnown RBP6.29□□□□□ -1.4
SCFD1-208ENST00000553278 SH3BP1Q9Y3L3 701 aa6.29□□□□□ -1.4
SCFD1-208ENST00000553278 SCO2A0A1W2PP80 73 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 FFAR3O14843 346 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 TNFSF14O43557 240 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 HYAL3O43820 417 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-208ENST00000553278 B4GALT3O60512 393 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 BEST1O76090 585 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 CYP3A4P08684 503 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 IL11P20809 199 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 CTNNA1P35221 906 aaKnown RBP6.28□□□□□ -1.4
SCFD1-208ENST00000553278 PSMB10P40306 273 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 TLE3Q04726 772 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 STK4Q13043 487 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 LY6KQ17RY6 165 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 GPR139Q6DWJ6 353 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 NAA16Q6N069 864 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-208ENST00000553278 CYP20A1Q6UW02 462 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 ARHGEF18Q6ZSZ5 1173 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 VSIG1Q86XK7 387 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 CNTROBQ8N137 903 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 C17orf53Q8N3J3 647 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-208ENST00000553278 ZNF808Q8N4W9 903 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-208ENST00000553278 Q8NA96 180 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 SSH3Q8TE77 659 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 SCFD2Q8WU76 684 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 RUFY2Q8WXA3 655 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 JAKMIP2Q96AA8 810 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 TMEM125Q96AQ2 219 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 ELP4Q96EB1 424 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 CLPBQ9H078 707 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 MRGBPQ9NV56 204 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 CD207Q9UJ71 328 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 KCNE5Q9UJ90 142 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 OSGIN2Q9Y236 505 aa6.28□□□□□ -1.4
SCFD1-208ENST00000553278 FAM90A7PA6NKC0 464 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 ZAR1LA6NP61 321 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 A8MVJ9 347 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 FAM90A22PA8MWA6 464 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 FAM90A12PA8MX19 464 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 FAM90A23PA8MXZ1 464 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms