RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HSPA5P11021 654 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 CNTFP26441 200 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 KLRC1P26715 233 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 ELF1P32519 619 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 SREBF1P36956 1147 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 GDF5P43026 501 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 PHKA1P46020 1223 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 SLC6A9P48067 706 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 CDK7P50613 346 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 ACLYP53396 1101 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 ANTXR2P58335 489 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 CTXN1P60606 82 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 POU6F2P78424 691 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 SIM2Q14190 667 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 SPARCL1Q14515 664 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 ZNF568Q3ZCX4 644 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 HERC4Q5GLZ8 1057 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 INTS11Q5TA45 600 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 PSRC1Q6PGN9 363 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 Q6ZVL8 140 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 UNC13DQ70J99 1090 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 TAS1R1Q7RTX1 841 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 PROSER1Q86XN7 944 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 CCDC117Q8IWD4 279 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 SUGP1Q8IWZ8 645 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 RNF152Q8N8N0 203 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 IPO4Q8TEX9 1081 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 ZCCHC14Q8WYQ9 949 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 HDAC2Q92769 488 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 MBD6Q96DN6 1003 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 PRPF18Q99633 342 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 PYM1Q9BRP8 204 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 PUS3Q9BZE2 481 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 HAPLN2Q9GZV7 340 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 KLC2Q9H0B6 622 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 SIK2Q9H0K1 926 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 DEF6Q9H4E7 631 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 HEYLQ9NQ87 328 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 A1CFQ9NQ94 594 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 XPNPEP3Q9NQH7 507 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 DDX4Q9NQI0 724 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 HYPKQ9NX55 129 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 COL20A1Q9P218 1284 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 PDP2Q9P2J9 529 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 NUDCQ9Y266 331 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 MAP3K2Q9Y2U5 619 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 VWA7Q9Y334 891 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 ZDHHC9Q9Y397 364 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 RBM8AQ9Y5S9 174 aaKnown RBP4.23□□□□□ -1.73
LIMA1-208ENST00000551691 NBEAQ8NFP9 2946 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 DLG5Q8TDM6 1919 aa4.23□□□□□ -1.73
LIMA1-208ENST00000551691 ZFYVE26Q68DK2 2539 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ANKRD18BA2A2Z9 1011 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 FAM234BA2RU67 622 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 SLC15A5A6NIM6 579 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 PYCARD-AS1I3L0S3 204 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 F2RL2O00254 374 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 GRM6O15303 877 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ADCY6O43306 1168 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 FIBPO43427 364 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ZNF500O60304 480 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 B4GALT4O60513 344 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 SNX2O60749 519 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 FRAT2O75474 233 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 CHGBP05060 677 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 HDCP19113 662 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 HOXA7P31268 230 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 NAP1L1P55209 391 aaKnown RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 POLE2P56282 527 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 PSMC1P62191 440 aaKnown RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 PABPC1LQ4VXU2 614 aaKnown RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 TMEM200BQ69YZ2 307 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ZNF280DQ6N043 979 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 FAM180BQ6P0A1 224 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 CATSPERGQ6ZRH7 1159 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 DEFB128Q7Z7B8 93 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 CIR1Q86X95 450 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ADHFE1Q8IWW8 467 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 KBTBD2Q8IY47 623 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 TRMT2AQ8IZ69 625 aaKnown RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 DCLK2Q8N568 766 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ZGPATQ8N5A5 531 aaKnown RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 SLC15A4Q8N697 577 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 PIK3C3Q8NEB9 887 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 REPS2Q8NFH8 660 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 OR5M3Q8NGP4 307 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 MDM1Q8TC05 714 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 FAM71BQ8TC56 605 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 NEK9Q8TD19 979 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 CASKIN2Q8WXE0 1202 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 HOXB13Q92826 284 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 MRGPRX1Q96LB2 322 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 YTHDC1Q96MU7 727 aaKnown RBP4.22□□□□□ -1.73
LIMA1-208ENST00000551691 ZNF747Q9BV97 191 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 TMEM168Q9H0V1 697 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 CD248Q9HCU0 757 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 SAYSD1Q9NPB0 183 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 VPS45Q9NRW7 570 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 RASSF1Q9NS23 344 aa4.22□□□□□ -1.73
LIMA1-208ENST00000551691 KCND1Q9NSA2 647 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms