RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 SLC5A5Q92911 643 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SLC35C1Q96A29 364 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 OSBPL6Q9BZF3 934 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 COPS7BQ9H9Q2 264 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 VIRMAQ69YN4 1812 aaKnown RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 EEF2KO00418 725 aaKnown RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 RECQL5O94762 991 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SUPT7LO94864 414 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SGPL1O95470 568 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 ELK3P41970 407 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 IL5RAQ01344 420 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 TSPY1Q01534 308 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 FASTKQ14296 549 aaKnown RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 ATP6AP1LQ52LC2 224 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 CCDC149Q6ZUS6 474 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 MRPL48Q96GC5 212 aaKnown RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 TCF12Q99081 682 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 STK32BQ9NY57 414 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 ANAPC2Q9UJX6 822 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SLIT2O94813 1529 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SNAP23O00161 211 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SNPHO15079 494 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 PEX1O43933 1283 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 NTSR2O95665 410 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 ADRA2BP18089 450 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 MAGEA8P43361 318 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 NR2C2P49116 596 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SPIRE1Q08AE8 756 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 SLC44A5Q8NCS7 719 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 REXO4Q9GZR2 422 aaKnown RBP13.13□□□□□ -0.31
PTCH1-212ENST00000546744 POLR1BQ9H9Y6 1135 aa13.13□□□□□ -0.31
PTCH1-212ENST00000546744 CHADO15335 359 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 DCXO43602 365 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 TPBGLP0DKB5 382 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ANXA11P50995 505 aaKnown RBP13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ZNF135P52742 658 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-212ENST00000546744 MRPS22P82650 360 aaKnown RBP13.12□□□□□ -0.31
PTCH1-212ENST00000546744 AKAP14Q86UN6 197 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ADHFE1Q8IWW8 467 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 PRKD2Q9BZL6 878 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 MUC13Q9H3R2 512 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 KLHL31Q9H511 634 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 S100A14Q9HCY8 104 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ARMCX1Q9P291 453 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 IPPQ9Y573 584 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 GPC6Q9Y625 555 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-212ENST00000546744 RRM2P31350 389 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 TUBA3CQ13748 450 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 SPIDRQ14159 915 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 DGKDQ16760 1214 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 SCARA3Q6AZY7 606 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 GJB7Q6PEY0 223 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 PTF1AQ7RTS3 328 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 RDH11Q8TC12 318 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 LGALS13Q9UHV8 139 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 FAM205AQ6ZU69 1335 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ERI2A8K979 691 aaKnown RBP13.12□□□□□ -0.31
PTCH1-212ENST00000546744 AGPSO00116 658 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 FSCN2O14926 492 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 PDGFRBP09619 1106 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ALOX12P18054 663 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 PSMA3P25788 255 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 PRDX6P30041 224 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 RPA3P35244 121 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-212ENST00000546744 CCT8P50990 548 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 POU4F1Q01851 419 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 QPCTQ16769 361 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 TMEM119Q4V9L6 283 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ABRAQ8N0Z2 381 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 ACTRT2Q8TDY3 377 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 BAP1Q92560 729 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 CACNA2D2Q9NY47 1150 aa13.12□□□□□ -0.31
PTCH1-212ENST00000546744 SUPT3HB4E1H0 165 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 BAIAP3O94812 1187 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 SLC4A1P02730 911 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 VCLP18206 1134 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 ATP6V1B2P21281 511 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 CDC25CP30307 473 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 MAGEA10P43363 369 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-212ENST00000546744 PPP4CP60510 307 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 MAPRE1Q15691 268 aaKnown RBP13.11□□□□□ -0.31
PTCH1-212ENST00000546744 TMEM26Q6ZUK4 368 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 KRT74Q7RTS7 529 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 TBC1D16Q8TBP0 767 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 AGAP3Q96P47 875 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 NUAK2Q9H093 628 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 SENP2Q9HC62 589 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 CDH9Q9ULB4 789 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 TMCC3Q9ULS5 477 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 HACD1B0YJ81 288 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 APOC4-APOC2K7ER74 178 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 APOC2P02655 101 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 COX4I1P13073 169 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 PGAM1P18669 254 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 RASA1P20936 1047 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 SULT1E1P49888 294 aa13.11□□□□□ -0.31
PTCH1-212ENST00000546744 AARS2Q5JTZ9 985 aaKnown RBP13.11□□□□□ -0.31
PTCH1-212ENST00000546744 RNF220Q5VTB9 566 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms