RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 MMS22LQ6ZRQ5 1243 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 SLC26A9Q7LBE3 791 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 BNIPLQ7Z465 357 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 ACOT1Q86TX2 421 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 CREG2Q8IUH2 290 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 OR6B3Q8NGW1 331 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 CPA5Q8WXQ8 436 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 GAL3ST3Q96A11 431 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 FUBP3Q96I24 572 aaKnown RBP eCLIP8.84□□□□□ -0.99
VPS29-203ENST00000546588 RNPC3Q96LT9 517 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 CPXM1Q96SM3 734 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 OSBPL9Q96SU4 736 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 KRTAP4-12Q9BQ66 201 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 SYT15Q9BQS2 421 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 DUSP16Q9BY84 665 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 TSPYL1Q9H0U9 437 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 SNX25Q9H3E2 840 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 IL23AQ9NPF7 189 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 ASNSD1Q9NWL6 643 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 DDX43Q9NXZ2 648 aaKnown RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 STK39Q9UEW8 545 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 TMEM59LQ9UK28 342 aa8.84□□□□□ -0.99
VPS29-203ENST00000546588 FBXO9Q9UK97 447 aaPredicted RBP8.84□□□□□ -0.99
VPS29-203ENST00000546588 SF3B1O75533 1304 aaKnown RBP eCLIP8.83□□□□□ -1
VPS29-203ENST00000546588 DOCK4Q8N1I0 1966 aa8.83□□□□□ -1
VPS29-203ENST00000546588 CCDC66A2RUB6 948 aa8.83□□□□□ -1
VPS29-203ENST00000546588 TMCO5BA8MYB1 307 aa8.83□□□□□ -1
VPS29-203ENST00000546588 HHLA1C9JL84 531 aa8.83□□□□□ -1
VPS29-203ENST00000546588 NRP1O14786 923 aa8.83□□□□□ -1
VPS29-203ENST00000546588 PROSCO94903 275 aa8.83□□□□□ -1
VPS29-203ENST00000546588 GALTP07902 379 aa8.83□□□□□ -1
VPS29-203ENST00000546588 NEFHP12036 1026 aa8.83□□□□□ -1
VPS29-203ENST00000546588 CD19P15391 556 aa8.83□□□□□ -1
VPS29-203ENST00000546588 PTPN1P18031 435 aaKnown RBP8.83□□□□□ -1
VPS29-203ENST00000546588 PEX19P40855 299 aa8.83□□□□□ -1
VPS29-203ENST00000546588 PEX5P50542 639 aa8.83□□□□□ -1
VPS29-203ENST00000546588 SNX16P57768 344 aa8.83□□□□□ -1
VPS29-203ENST00000546588 CLUL1Q15846 466 aa8.83□□□□□ -1
VPS29-203ENST00000546588 GOLGA7BQ2TAP0 167 aa8.83□□□□□ -1
VPS29-203ENST00000546588 OVOS1Q6IE37 1185 aa8.83□□□□□ -1
VPS29-203ENST00000546588 PMF1Q6P1K2 205 aa8.83□□□□□ -1
VPS29-203ENST00000546588 OLFML1Q6UWY5 402 aa8.83□□□□□ -1
VPS29-203ENST00000546588 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.83□□□□□ -14e-10■■■■□ 25.2
VPS29-203ENST00000546588 CLEC20AQ6ZU45 233 aa8.83□□□□□ -1
VPS29-203ENST00000546588 BEND5Q7L4P6 421 aa8.83□□□□□ -1
VPS29-203ENST00000546588 POLNQ7Z5Q5 900 aa8.83□□□□□ -1
VPS29-203ENST00000546588 ERICH1Q86X53 443 aa8.83□□□□□ -1
VPS29-203ENST00000546588 VSIG1Q86XK7 387 aa8.83□□□□□ -1
VPS29-203ENST00000546588 DNAAF5Q86Y56 855 aa8.83□□□□□ -1
VPS29-203ENST00000546588 PASD1Q8IV76 773 aa8.83□□□□□ -1
VPS29-203ENST00000546588 C12orf29Q8N999 325 aa8.83□□□□□ -1
VPS29-203ENST00000546588 FEZF2Q8TBJ5 459 aa8.83□□□□□ -1
VPS29-203ENST00000546588 ACTRT1Q8TDG2 376 aa8.83□□□□□ -1
VPS29-203ENST00000546588 C18orf8Q96DM3 657 aa8.83□□□□□ -1
VPS29-203ENST00000546588 HEXIM2Q96MH2 286 aaKnown RBP8.83□□□□□ -1
VPS29-203ENST00000546588 C11orf70Q9BRQ4 267 aa8.83□□□□□ -1
VPS29-203ENST00000546588 C11orf84Q9BUA3 381 aaPredicted RBP8.83□□□□□ -1
VPS29-203ENST00000546588 ADAM19Q9H013 955 aa8.83□□□□□ -1
VPS29-203ENST00000546588 ZCWPW1Q9H0M4 648 aa8.83□□□□□ -1
VPS29-203ENST00000546588 IRF2BPLQ9H1B7 796 aa8.83□□□□□ -1
VPS29-203ENST00000546588 CHST7Q9NS84 486 aa8.83□□□□□ -1
VPS29-203ENST00000546588 SEPT11Q9NVA2 429 aaKnown RBP8.83□□□□□ -1
VPS29-203ENST00000546588 CTTNBP2NLQ9P2B4 639 aa8.83□□□□□ -1
VPS29-203ENST00000546588 HSFX1Q9UBD0 423 aa8.83□□□□□ -1
VPS29-203ENST00000546588 CACNG4Q9UBN1 327 aa8.83□□□□□ -1
VPS29-203ENST00000546588 DNAJB4Q9UDY4 337 aa8.83□□□□□ -1
VPS29-203ENST00000546588 ANAPC7Q9UJX3 599 aa8.83□□□□□ -1
VPS29-203ENST00000546588 ALG6Q9Y672 507 aa8.83□□□□□ -1
VPS29-203ENST00000546588 CHD5Q8TDI0 1954 aa8.82□□□□□ -1
VPS29-203ENST00000546588 OR6C75A6NL08 312 aa8.82□□□□□ -1
VPS29-203ENST00000546588 EFCAB8A8MWE9 144 aa8.82□□□□□ -1
VPS29-203ENST00000546588 PSTPIP1O43586 416 aa8.82□□□□□ -1
VPS29-203ENST00000546588 HCRTO43612 131 aa8.82□□□□□ -1
VPS29-203ENST00000546588 SLU7O95391 586 aaKnown RBP8.82□□□□□ -1
VPS29-203ENST00000546588 AMHP03971 560 aa8.82□□□□□ -1
VPS29-203ENST00000546588 GLI1P08151 1106 aa8.82□□□□□ -1
VPS29-203ENST00000546588 CSF2RAP15509 400 aa8.82□□□□□ -1
VPS29-203ENST00000546588 EPHA1P21709 976 aa8.82□□□□□ -1
VPS29-203ENST00000546588 PTPN7P35236 360 aa8.82□□□□□ -1
VPS29-203ENST00000546588 MAGEA11P43364 429 aa8.82□□□□□ -1
VPS29-203ENST00000546588 BRCC3P46736 316 aa8.82□□□□□ -1
VPS29-203ENST00000546588 SLC11A1P49279 550 aa8.82□□□□□ -1
VPS29-203ENST00000546588 GYS2P54840 703 aa8.82□□□□□ -1
VPS29-203ENST00000546588 RPL6Q02878 288 aaKnown RBP8.82□□□□□ -1
VPS29-203ENST00000546588 GSTM4Q03013 218 aa8.82□□□□□ -1
VPS29-203ENST00000546588 YWHAHQ04917 246 aaPredicted RBP8.82□□□□□ -1
VPS29-203ENST00000546588 PPIGQ13427 754 aaKnown RBP eCLIP8.82□□□□□ -1
VPS29-203ENST00000546588 PIGHQ14442 188 aaPredicted RBP8.82□□□□□ -1
VPS29-203ENST00000546588 DDR2Q16832 855 aa8.82□□□□□ -1
VPS29-203ENST00000546588 PRSS36Q5K4E3 855 aa8.82□□□□□ -1
VPS29-203ENST00000546588 PSAPL1Q6NUJ1 521 aa8.82□□□□□ -1
VPS29-203ENST00000546588 PSRC1Q6PGN9 363 aaPredicted RBP8.82□□□□□ -1
VPS29-203ENST00000546588 DSTYKQ6XUX3 929 aa8.82□□□□□ -1
VPS29-203ENST00000546588 RSRC2Q7L4I2 434 aaKnown RBP8.82□□□□□ -1
VPS29-203ENST00000546588 DAAM2Q86T65 1068 aa8.82□□□□□ -1
VPS29-203ENST00000546588 METTL23Q86XA0 190 aa8.82□□□□□ -1
VPS29-203ENST00000546588 ABI1Q8IZP0 508 aa8.82□□□□□ -1
VPS29-203ENST00000546588 CEP112Q8N8E3 955 aa8.82□□□□□ -1
VPS29-203ENST00000546588 LSM14AQ8ND56 463 aaKnown RBP8.82□□□□□ -1
VPS29-203ENST00000546588 ZMIZ2Q8NF64 920 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms