RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 LGALS16A8MUM7 142 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 F8VZ95 297 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 PIK3R2O00459 728 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 PAPSS1O43252 624 aaPredicted RBP12.29□□□□□ -0.44
HDAC4-216ENST00000544989 RHOBTB1O94844 696 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 APOEP02649 317 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 CISD3P0C7P0 127 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 HNRNPLP14866 589 aaKnown RBP eCLIP12.29□□□□□ -0.44
HDAC4-216ENST00000544989 CYP11B1P15538 503 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 SDHBP21912 280 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 SCNN1AP37088 669 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 CDK17Q00537 523 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 DMWDQ09019 674 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 ELF2Q15723 593 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 DPY19L2P1Q6NXN4 242 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 SLC47A2Q86VL8 602 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 CCDC117Q8IWD4 279 aaPredicted RBP12.29□□□□□ -0.44
HDAC4-216ENST00000544989 CCDC33Q8N5R6 958 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 DQX1Q8TE96 717 aaKnown RBP12.29□□□□□ -0.44
HDAC4-216ENST00000544989 WFIKKN2Q8TEU8 576 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 CLEC4CQ8WTT0 213 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 ZC3H10Q96K80 434 aaKnown RBP12.29□□□□□ -0.44
HDAC4-216ENST00000544989 SPACA7Q96KW9 195 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 KIAA1549LQ6ZVL6 1849 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 ATRXP46100 2492 aa12.29□□□□□ -0.44
HDAC4-216ENST00000544989 MSI1O43347 362 aaKnown RBP12.28□□□□□ -0.44
HDAC4-216ENST00000544989 ACSL4O60488 711 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 FYNP06241 537 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 CCDC172P0C7W6 258 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 ZNF18P17022 549 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 CDH5P33151 784 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-216ENST00000544989 COPB1P53618 953 aaKnown RBP12.28□□□□□ -0.44
HDAC4-216ENST00000544989 ARID5AQ03989 594 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 MESP2Q0VG99 397 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 STARD3Q14849 445 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 CHPFQ8IZ52 775 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 HJURPQ8NCD3 748 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-216ENST00000544989 ZNF397Q8NF99 534 aaPredicted RBP12.28□□□□□ -0.44
HDAC4-216ENST00000544989 NEK11Q8NG66 645 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 BHMTQ93088 406 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 SPAG5Q96R06 1193 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 CPXM1Q96SM3 734 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 GABRG3Q99928 467 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 ACP6Q9NPH0 428 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 PLK2Q9NYY3 685 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 TMEM63CQ9P1W3 806 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 BCCIPQ9P287 314 aaKnown RBP eCLIP12.28□□□□□ -0.44
HDAC4-216ENST00000544989 CYTH4Q9UIA0 394 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 NAALADL1Q9UQQ1 740 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 PAXBP1Q9Y5B6 917 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 PCDHGA5Q9Y5G8 931 aa12.28□□□□□ -0.44
HDAC4-216ENST00000544989 MYO18AQ92614 2054 aaKnown RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 MED19A0JLT2 244 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 PRR5-ARHGAP8B1AHC4 643 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 SGK1O00141 431 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 ADAM23O75077 832 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 CAVIN2O95810 425 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 TRUB2O95900 331 aaKnown RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 CHRM1P11229 460 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 HOXB2P14652 356 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 ABCB4P21439 1286 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 HOXD9P28356 352 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 CCR1P32246 355 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 STAT1P42224 750 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 GABRB2P47870 512 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 PXNP49023 591 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 POLR2FP61218 127 aaKnown RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 ARHGAP8P85298 464 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 SLC6A3Q01959 620 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 LMNB2Q03252 620 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 UBXN1Q04323 297 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 KLHL40Q2TBA0 621 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 FILIP1LQ4L180 1135 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 DCAF6Q58WW2 860 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 SPDYCQ5MJ68 293 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 ACBD5Q5T8D3 534 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 EMC10Q5UCC4 262 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 PIK3R6Q5UE93 754 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 OR6B2Q6IFH4 312 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 ANO7Q6IWH7 933 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 CAVIN1Q6NZI2 390 aaKnown RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 TRIM72Q6ZMU5 477 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 SLC26A9Q7LBE3 791 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 PASD1Q8IV76 773 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 WDTC1Q8N5D0 677 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 ATP6V0D2Q8N8Y2 350 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 SLC39A13Q96H72 371 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 PIWIL1Q96J94 861 aaKnown RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 BTN2A3PQ96KV6 586 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 FCRL2Q96LA5 508 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 PCMTD1Q96MG8 357 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 SLC2A13Q96QE2 648 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 ERGIC2Q96RQ1 377 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 GANQ9H2C0 597 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 FAM207AQ9NSI2 230 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.27□□□□□ -0.452e-6■■■■■ 29.8
HDAC4-216ENST00000544989 AJAP1Q9UKB5 411 aaPredicted RBP12.27□□□□□ -0.45
HDAC4-216ENST00000544989 STAP1Q9ULZ2 295 aa12.27□□□□□ -0.45
HDAC4-216ENST00000544989 TCRBV21S2A2A0A5A6 115 aa12.26□□□□□ -0.45
HDAC4-216ENST00000544989 PRRT4C9JH25 899 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms