RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SERPINB11Q96P15 392 aa14.78□□□□□ -0.04
USP28-209ENST00000540925 SLC2A11Q9BYW1 496 aa14.78□□□□□ -0.04
USP28-209ENST00000540925 ZDHHC4Q9NPG8 344 aa14.78□□□□□ -0.04
USP28-209ENST00000540925 NOCTQ9UK39 431 aaKnown RBP14.78□□□□□ -0.04
USP28-209ENST00000540925 A0A1W2PQF6 199 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 AXIN1O15169 862 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 IRAK2O43187 625 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 SLC6A4P31645 630 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 KRT9P35527 623 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 SGSHP51688 502 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 ENPP2Q13822 863 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 SIM2Q14190 667 aaPredicted RBP14.77□□□□□ -0.05
USP28-209ENST00000540925 GEN1Q17RS7 908 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 MPPE1Q53F39 396 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 EOGTQ5NDL2 527 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 MPP7Q5T2T1 576 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 PIK3R6Q5UE93 754 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 NUDT18Q6ZVK8 323 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 FAM183BPQ6ZVS7 135 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 SLC26A9Q7LBE3 791 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 TRMT11Q7Z4G4 463 aaKnown RBP14.77□□□□□ -0.05
USP28-209ENST00000540925 KIAA0907Q7Z7F0 614 aaPredicted RBP14.77□□□□□ -0.05
USP28-209ENST00000540925 UNC45BQ8IWX7 931 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 DCLK2Q8N568 766 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.77□□□□□ -0.05
USP28-209ENST00000540925 MDGA1Q8NFP4 955 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 TSTD1Q8NFU3 115 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 ZC3H10Q96K80 434 aaKnown RBP14.77□□□□□ -0.05
USP28-209ENST00000540925 NOX5Q96PH1 765 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 ACOX2Q99424 681 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 GABRG3Q99928 467 aa14.77□□□□□ -0.05
USP28-209ENST00000540925 FAM207AQ9NSI2 230 aaPredicted RBP14.77□□□□□ -0.05
USP28-209ENST00000540925 ACSL4O60488 711 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 HSF2BPO75031 334 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 RPP40O75818 363 aaKnown RBP14.76□□□□□ -0.05
USP28-209ENST00000540925 LSM8O95777 96 aaKnown RBP14.76□□□□□ -0.05
USP28-209ENST00000540925 TRUB2O95900 331 aaKnown RBP14.76□□□□□ -0.05
USP28-209ENST00000540925 CYBBP04839 570 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 CHRNB2P17787 502 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 NTSR1P30989 418 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 POLR2FP61218 127 aaKnown RBP14.76□□□□□ -0.05
USP28-209ENST00000540925 SYCP1Q15431 976 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 EFHC1Q5JVL4 640 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 FKBP15Q5T1M5 1219 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 OTUD1Q5VV17 481 aaPredicted RBP14.76□□□□□ -0.05
USP28-209ENST00000540925 TMEM215Q68D42 235 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 ZDHHC17Q8IUH5 632 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 FAM160A2Q8N612 972 aaPredicted RBP14.76□□□□□ -0.05
USP28-209ENST00000540925 ADAM32Q8TC27 787 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 MYEOVQ96EZ4 313 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 LMLNQ96KR4 655 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 PRICKLE1Q96MT3 831 aaPredicted RBP14.76□□□□□ -0.05
USP28-209ENST00000540925 ADAM33Q9BZ11 813 aa14.76□□□□□ -0.05
USP28-209ENST00000540925 MUC22E2RYF6 1773 aaPredicted RBP14.75□□□□□ -0.05
USP28-209ENST00000540925 PLXND1Q9Y4D7 1925 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 GOLGA6L7A0A1B0GV03 622 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 KCNU1A8MYU2 1149 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 TPM2P07951 284 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 HLA-FP30511 346 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 SOX5P35711 763 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 SCNN1AP37088 669 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 SLC11A2P49281 568 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 NOMO3P69849 1222 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 SLC6A3Q01959 620 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 IQCB1Q15051 598 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 TAF3Q5VWG9 929 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 RFWD3Q6PCD5 774 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 ANKS1BQ7Z6G8 1248 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 KBTBD6Q86V97 674 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 ZNF677Q86XU0 584 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 DEFB106AQ8N104 65 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 TMEM35BQ8NCS4 154 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 DDI1Q8WTU0 396 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 SLC20A1Q8WUM9 679 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 NT5C3BQ969T7 300 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 TMA16Q96EY4 203 aaKnown RBP14.75□□□□□ -0.05
USP28-209ENST00000540925 NAT10Q9H0A0 1025 aaKnown RBP14.75□□□□□ -0.05
USP28-209ENST00000540925 CALCOCO1Q9P1Z2 691 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 THAP10Q9P2Z0 257 aaPredicted RBP14.75□□□□□ -0.05
USP28-209ENST00000540925 XPO7Q9UIA9 1087 aaKnown RBP14.75□□□□□ -0.05
USP28-209ENST00000540925 SPAG17Q6Q759 2223 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 CACNA1BQ00975 2339 aa14.75□□□□□ -0.05
USP28-209ENST00000540925 CAPN9O14815 690 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 TSPAN3O60637 253 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 LRP3O75074 770 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 DAB1O75553 588 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 GFPT2O94808 682 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 CYP1A1P04798 512 aaPredicted RBP14.74□□□□□ -0.05
USP28-209ENST00000540925 RETP07949 1114 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 MMEP08473 750 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 C7P10643 843 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 FMO1Q01740 532 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 CDR2Q01850 454 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 UBXN1Q04323 297 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 EIF4HQ15056 248 aaKnown RBP14.74□□□□□ -0.05
USP28-209ENST00000540925 LPAL2Q16609 132 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 PLK5Q496M5 336 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 DCAF6Q58WW2 860 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 ZC3H12AQ5D1E8 599 aaKnown RBP14.74□□□□□ -0.05
USP28-209ENST00000540925 ANO7Q6IWH7 933 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms