RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SNX5Q9Y5X3 404 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 LOC102724159A0A0B4J2E5 919 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 NT5C1B-RDH14C9J2C7 533 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 CCNE2O96020 404 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 CYP2A6P11509 494 aaPredicted RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 HNRNPH2P55795 449 aaKnown RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 MGAT5Q09328 741 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 EIF2B5Q13144 721 aaKnown RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 ACOX1Q15067 660 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 PWP2Q15269 919 aaKnown RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 ZC3H12AQ5D1E8 599 aaKnown RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 PIGZQ86VD9 579 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 EPS8L1Q8TE68 723 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 SEPT3Q9UH03 358 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 RNF103O00237 685 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 AIM2O14862 343 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 DARSP14868 501 aaKnown RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 PSEN1P49768 467 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 ACOT9Q9Y305 439 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 HACD1B0YJ81 288 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 CXCL14O95715 111 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 ATP6V1E1P36543 226 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 FUT2Q10981 343 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 TP53BP2Q13625 1128 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 CXorf38Q8TB03 319 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 FBXO25Q8TCJ0 367 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 EPS8L3Q8TE67 593 aaKnown RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 OTULINQ96BN8 352 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 TSPAN18Q96SJ8 248 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 PAFAH2Q99487 392 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 MAF1Q9H063 256 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 GID8Q9NWU2 228 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 OR12D3Q9UGF7 316 aa14.48□□□□□ -0.09
USP3-204ENST00000540797 EIF3LQ9Y262 564 aaKnown RBP14.48□□□□□ -0.09
USP3-204ENST00000540797 F8VP50 259 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 FKBP9O95302 570 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 CALCAP01258 141 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 PYGMP11217 842 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 FKBP9P1Q75LS8 142 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 PATL1Q86TB9 770 aaKnown RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 SLC26A11Q86WA9 606 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 ANKRD52Q8NB46 1076 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 C17orf80Q9BSJ5 609 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 CFAP73A6NFT4 308 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 EVPLLA8MZ36 301 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 KCNT2Q6UVM3 1135 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 C16orf89Q6UX73 402 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 NLRP9Q7RTR0 991 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 ST13P4Q8IZP2 240 aaPredicted RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 CMTM5Q96DZ9 223 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 CCT8L2Q96SF2 557 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 ZCCHC2Q9C0B9 1178 aaKnown RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 CCDC90BQ9GZT6 254 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 FAM153AQ9UHL3 310 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 MORC2Q9Y6X9 1032 aaPredicted RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 RBP1P09455 135 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 CNTFP26441 200 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 MMP13P45452 471 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 CACHD1Q5VU97 1274 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 RAP1GAP2Q684P5 730 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 LRRC52Q8N7C0 313 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 C2orf49Q9BVC5 232 aaPredicted RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 CDC42EP4Q9H3Q1 356 aaKnown RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 FAM237AA0A1B0GTK4 181 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 SIGLEC16A6NMB1 481 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 PDZK1P1A8MUH7 402 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 TREHO43280 583 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 CYP2C18P33260 490 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 POLR2LP62875 67 aaKnown RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 CSHL1Q14406 222 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 C15orf59Q2T9L4 293 aaPredicted RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 DNAL1Q4LDG9 190 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 FAM183BPQ6ZVS7 135 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 TRMT11Q7Z4G4 463 aaKnown RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 ZNF473Q8WTR7 871 aaKnown RBP14.47□□□□□ -0.09
USP3-204ENST00000540797 TUBGCP3Q96CW5 907 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 PRKD2Q9BZL6 878 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 CYP4F12Q9HCS2 524 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 TMEM161AQ9NX61 479 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 SIK3Q9Y2K2 1263 aa14.47□□□□□ -0.09
USP3-204ENST00000540797 FGF10O15520 208 aaPredicted RBP14.46□□□□□ -0.09
USP3-204ENST00000540797 SKAP2O75563 359 aaPredicted RBP14.46□□□□□ -0.09
USP3-204ENST00000540797 TUSC3Q13454 348 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 ARMC12Q5T9G4 340 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 LRRC55Q6ZSA7 311 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 ARID3BQ8IVW6 561 aaPredicted RBP14.46□□□□□ -0.09
USP3-204ENST00000540797 WARS2Q9UGM6 360 aaKnown RBP14.46□□□□□ -0.09
USP3-204ENST00000540797 SCAMP3O14828 347 aaKnown RBP14.46□□□□□ -0.09
USP3-204ENST00000540797 GCKP35557 465 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 BRCC3P46736 316 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 DMTNQ08495 405 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 ECM1Q16610 540 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 PHKG1Q16816 387 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 GLT6D1Q7Z4J2 308 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 ERLEC1Q96DZ1 483 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 ZNF333Q96JL9 665 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 CAPN10Q9HC96 672 aa14.46□□□□□ -0.09
USP3-204ENST00000540797 DDX20Q9UHI6 824 aaKnown RBP14.46□□□□□ -0.09
USP3-204ENST00000540797 EIF3HO15372 352 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP3-204ENST00000540797 CA12O43570 354 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms