RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CXorf21Q9HAI6 301 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 IGSF5Q9NSI5 407 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 KBTBD4Q9NVX7 518 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 MEN1O00255 615 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 PPEF1O14829 653 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 SNAP91O60641 907 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ERBB2P04626 1255 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 H2AFZP0C0S5 128 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 DBTP11182 482 aaKnown RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 PLCG1P19174 1290 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ITIH1P19827 911 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 DCKP27707 260 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 EIF3EP60228 445 aaKnown RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TGFB2P61812 414 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 IFITM3Q01628 133 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TRAF2Q12933 501 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TAF12Q16514 161 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TCHHL1Q5QJ38 904 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 CENPPQ6IPU0 288 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 PGM2L1Q6PCE3 622 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 PIK3AP1Q6ZUJ8 805 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TMEM26Q6ZUK4 368 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 H2AFVQ71UI9 128 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 KIAA0895Q8NCT3 520 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 LRRC15Q8TF66 581 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TTC9Q92623 222 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 NXPE3Q969Y0 559 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 RMND5BQ96G75 393 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TMEM87BQ96K49 555 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 C9orf72Q96LT7 481 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 PLIN2Q99541 437 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 DNAI2Q9GZS0 605 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 NAA50Q9GZZ1 169 aaKnown RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 MANSC1Q9H8J5 431 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 MAGEE1Q9HCI5 957 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ALG13Q9NP73 1137 aaKnown RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 OLAHQ9NV23 265 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 WHRNQ9P202 907 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 SCAF8Q9UPN6 1271 aaKnown RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 KIAA1551Q9HCM1 1747 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 PABPN1LA6NDY0 278 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 PRR5-ARHGAP8B1AHC4 643 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 SNAP23O00161 211 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 TGDSO95455 350 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 PAHP00439 452 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 HSPA6P17066 643 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 EIF2AK2P19525 551 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 NUDT1P36639 197 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 COILP38432 576 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 NAMPTP43490 491 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 ARHGAP8P85298 464 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 CETN1Q12798 172 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 NFATC3Q12968 1075 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 PUM3Q15397 648 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 UBE2SQ16763 222 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 UGT3A1Q6NUS8 523 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 UNC5AQ6ZN44 842 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 IRF2BP2Q7Z5L9 587 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 ZC3H7AQ8IWR0 971 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 ANKRD13AQ8IZ07 590 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 HDAC2Q92769 488 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 MTMR9Q96QG7 549 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 ZKSCAN3Q9BRR0 538 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 ACAT2Q9BWD1 397 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 C12orf65Q9H3J6 166 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 SEPT3Q9UH03 358 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 NENFQ9UMX5 172 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 SLC27A5Q9Y2P5 690 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 AP4S1Q9Y587 144 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 CCDC88AQ3V6T2 1871 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 EXOC1LA0A1B0GW35 172 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 A0A1W2PPM1 405 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 TCRBV7S2A1N4TA0A589 114 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 PP2D1A8MPX8 630 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 RNGTTO60942 597 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 MAP3K6O95382 1288 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 KRT3P12035 628 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 NMT1P30419 496 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 OPRL1P41146 370 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 GRIA3P42263 894 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 HCAR3P49019 387 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 NME3Q13232 169 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 ADGRE1Q14246 886 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 RTN1Q16799 776 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 HSF5Q4G112 596 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 KIAA1841Q6NSI8 718 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 LRRC55Q6ZSA7 311 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 FAM109AQ8N4B1 249 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 FIBCD1Q8N539 461 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 SLC4A11Q8NBS3 891 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 GLIS3Q8NEA6 775 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 ADCY4Q8NFM4 1077 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 OR10Z1Q8NGY1 313 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 HM13Q8TCT9 377 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 DACT3Q96B18 629 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 TOE1Q96GM8 510 aaKnown RBP9.73□□□□□ -0.85
CLIP1-214ENST00000540539 C1orf50Q9BV19 199 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms