RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PIK3R2O00459 728 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 TPP1O14773 563 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 DHX15O43143 795 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 LSM8O95777 96 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 PIM1P11309 404 aaPredicted RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 RBL1P28749 1068 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ZBTB41Q5SVQ8 909 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 TTLL6Q8N841 843 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 USP18Q9UMW8 372 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 TNRC6CQ9HCJ0 1690 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 K7ERI5 159 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 RGL2O15211 777 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 CAPN15O75808 1086 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 FGFR3P22607 806 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 SLC25A11Q02978 314 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ORC1Q13415 861 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 MBLAC2Q68D91 279 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 C15orf39Q6ZRI6 1047 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 PTAR1Q7Z6K3 402 aaPredicted RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 KYQ8NBH2 561 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ZSCAN18Q8TBC5 510 aaPredicted RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 PPWD1Q96BP3 646 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 TARS2Q9BW92 718 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNF696Q9H7X3 374 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 PIH1D1Q9NWS0 290 aaKnown RBP13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 ADA2Q9NZK5 511 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 EPS15L1Q9UBC2 864 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 STK39Q9UEW8 545 aa13.22□□□□□ -0.29
SFSWAP-209ENST00000540469 C3orf70A6NLC5 250 aaPredicted RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 MYL4P12829 197 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 XRCC1P18887 633 aaPredicted RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 MX2P20592 715 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 GRK2P25098 689 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ENTPD1P49961 510 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 THOP1P52888 689 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ABCE1P61221 599 aaKnown RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ZBTB33Q86T24 672 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 CLVS1Q8IUQ0 354 aaPredicted RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 SMYD1Q8NB12 490 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 MCPH1Q8NEM0 835 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ADCY4Q8NFM4 1077 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 TMIGD2Q96BF3 282 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 THAP11Q96EK4 314 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 PLGRKTQ9HBL7 147 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 TBC1D23Q9NUY8 699 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNF219Q9P2Y4 722 aaPredicted RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 A0A1B0GTW7 788 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 PRPSAP2O60256 369 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 CSPG5O95196 566 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 KRT19P08727 400 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 THRAP10827 490 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 FGF3P11487 239 aaPredicted RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ZFXP17010 805 aaPredicted RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ACAT1P24752 427 aaKnown RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 PSMD7P51665 324 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 TUBB3Q13509 450 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 FAM102AQ5T9C2 384 aaPredicted RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 ZFP1Q6P2D0 407 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 DENND1BQ6P3S1 775 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 PKP2Q99959 881 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 TMEM79Q9BSE2 394 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 PAIP1Q9H074 479 aaKnown RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 RBM38Q9H0Z9 239 aaKnown RBP13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 COG4Q9H9E3 785 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 COL20A1Q9P218 1284 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 CDY2AQ9Y6F7 541 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 CDY1Q9Y6F8 540 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 SBF2Q86WG5 1849 aa13.21□□□□□ -0.29
SFSWAP-209ENST00000540469 SLC15A5A6NIM6 579 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 TFPTP0C1Z6 253 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 CRADDP78560 199 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 TFAMQ00059 246 aaKnown RBP13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 CDKL1Q00532 357 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 PDAP1Q13442 181 aaKnown RBP13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 TMEM132AQ24JP5 1023 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 PTPN20Q4JDL3 420 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 SWSAP1Q6NVH7 229 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 POTEHQ6S545 545 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 ERI1Q8IV48 349 aaKnown RBP13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 CROCCP3Q8IVE0 287 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 UNC5BQ8IZJ1 945 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 TMEM143Q96AN5 459 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 NLRP4Q96MN2 994 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 WRNIP1Q96S55 665 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 ADPGKQ9BRR6 497 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 RTKNQ9BST9 563 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 FRMD8Q9BZ67 464 aaPredicted RBP13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 PNPLA8Q9NP80 782 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 TCF7L2Q9NQB0 619 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 DNAJC28Q9NX36 388 aa13.21□□□□□ -0.3
SFSWAP-209ENST00000540469 PDGFRBP09619 1106 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 PRKCHP24723 683 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 EMP3P54852 163 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 SESN2P58004 480 aaPredicted RBP13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 MYL6P60660 151 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 KRT76Q01546 638 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 PLOD1Q02809 727 aaPredicted RBP13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 PPP2R5DQ14738 602 aa13.2□□□□□ -0.3
SFSWAP-209ENST00000540469 NOMO1Q15155 1222 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms