RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 HDAC4P56524 1084 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 LACTB2Q53H82 288 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 NAPEPLDQ6IQ20 393 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 AFAP1L2Q8N4X5 818 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 GPATCH11Q8N954 259 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 NDRG1Q92597 394 aaKnown RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 GLT1D1Q96MS3 346 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 KCTD15Q96SI1 283 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 LGMNQ99538 433 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 EBNA1BP2Q99848 306 aaKnown RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 PRDM12Q9H4Q4 367 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 CNGB3Q9NQW8 809 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 GDAP2Q9NXN4 497 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 ARHGAP42A6NI28 874 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 CCDC22O60826 627 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 HSPA4LO95757 839 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 BGNP21810 368 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 RNF43Q68DV7 783 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 FUKQ8N0W3 1084 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 BRD8Q9H0E9 1235 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 DMAP1Q9NPF5 467 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 PTCH2Q9Y6C5 1203 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 TCRBV7S3A2A0A539 114 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 MGAT1P26572 445 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 OR1G1P47890 313 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 NRLP54845 237 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 DPYSL2Q16555 572 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 TSNAXIP1Q2TAA8 658 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 FAM35AQ86V20 835 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 PSTKQ8IV42 348 aaKnown RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 BBS5Q8N3I7 341 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 CCDC185Q8N715 623 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 MCUQ8NE86 351 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 SLC44A1Q8WWI5 657 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 PIWIL1Q96J94 861 aaKnown RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 ADAM2Q99965 735 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 SLCO1B3Q9NPD5 702 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 NOP53Q9NZM5 478 aaKnown RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 HEY2Q9UBP5 337 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 Q9Y3F1 56 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 TCRBV5S1A1TA0A578 114 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 GPR32O75388 356 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 JCHAINP01591 159 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 BDNFP23560 247 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 L1CAMP32004 1257 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 ATXN1P54253 815 aaKnown RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 MGAT5Q09328 741 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 ASPHQ12797 758 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 PIRO00625 290 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 TARSP26639 723 aaKnown RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 MAP2K2P36507 400 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 KPNA2P52292 529 aaKnown RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 ZNF135P52742 658 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 ARHGEF6Q15052 776 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 SLC1A5Q15758 541 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 MARCH8Q5T0T0 291 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 RFX8Q6ZV50 586 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 C20orf96Q9NUD7 363 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 PIH1D1Q9NWS0 290 aaKnown RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 ABI2Q9NYB9 513 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 MARCOQ9UEW3 520 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 PRG3Q9Y2Y8 225 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 COMMD10Q9Y6G5 202 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 SPECC1L-ADORA2AF8WAN1 911 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 GLRA3O75311 464 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 PGAM1P18669 254 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 ADRA1BP35368 520 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 CACNB2Q08289 660 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 C6orf89Q6UWU4 347 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 LINC00523Q86TU6 105 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 ARID3BQ8IVW6 561 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 ARFGAP1Q8N6T3 406 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 CFAP61Q8NHU2 1237 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 TKTL2Q9H0I9 626 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 RGPD3A6NKT7 1758 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 RGPD4Q7Z3J3 1758 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 DNM1LO00429 736 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 HCRTO43612 131 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 GCATO75600 419 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 STAMBPO95630 424 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 ERCC2P18074 760 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 TPSB2P20231 275 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 GPX6P59796 221 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 GAD2Q05329 585 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 MOGSQ13724 837 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 NAA25Q14CX7 972 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 TPSAB1Q15661 275 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 RAET1EQ8TD07 263 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 QKIQ96PU8 341 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 NOD2Q9HC29 1040 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 SSU72Q9NP77 194 aaKnown RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 DCDC2Q9UHG0 476 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 HAO1Q9UJM8 370 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 TRHDEQ9UKU6 1024 aa11.09□□□□□ -0.63
CLIP1-213ENST00000540338 FARP1Q9Y4F1 1045 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-213ENST00000540338 EDF1O60869 148 aaKnown RBP11.08□□□□□ -0.63
CLIP1-213ENST00000540338 ASMTLO95671 621 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 CPB1P15086 417 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 PSMB4P28070 264 aa11.08□□□□□ -0.63
CLIP1-213ENST00000540338 CD52P31358 61 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms