RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 FAM83AQ86UY5 434 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PLAC1Q9HBJ0 212 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 STK32BQ9NY57 414 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 ATXN10Q9UBB4 475 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 MAGED2Q9UNF1 606 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 COL2A1P02458 1487 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PLIN3O60664 434 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 DGKIO75912 1065 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 ITGAXP20702 1163 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 NUDT2P50583 147 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 GBE1Q04446 702 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PDE1CQ14123 709 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 FSCBQ5H9T9 825 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 RTKN2Q8IZC4 609 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 GALNT4Q8N4A0 578 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 NETO2Q8NC67 525 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 MCRS1Q96EZ8 462 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PPP1R16BQ96T49 567 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PCDH18Q9HCL0 1135 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 CPSF3Q9UKF6 684 aaKnown RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 MSCO60682 206 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 COX4I1P13073 169 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 TGM2P21980 687 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 HMGCS2P54868 508 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 CDK18Q07002 472 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PDK2Q15119 407 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 TNS4Q8IZW8 715 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 FBXW8Q8N3Y1 598 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 PQLC3Q8N755 202 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 RNF148Q8N7C7 305 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 ACTRT2Q8TDY3 377 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 SNRNP25Q9BV90 132 aaKnown RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 CEP41Q9BYV8 373 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 GRIP2Q9C0E4 1043 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 ZNF358Q9NW07 568 aa11.59□□□□□ -0.55
SYNE1-237ENST00000539504 MAFBQ9Y5Q3 323 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-237ENST00000539504 SMIM31A0A1B0GVY4 71 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 C2CD4BA6NLJ0 364 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 WNT10BO00744 389 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 MX2P20592 715 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 CYP2F1P24903 491 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 FDFT1P37268 417 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 ATF7IP2Q5U623 682 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 EEF1DP3Q658K8 133 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 SIKE1Q9BRV8 207 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 FAM96AQ9H5X1 160 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 ACAD9Q9H845 621 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 MKS1Q9NXB0 559 aa11.58□□□□□ -0.55
SYNE1-237ENST00000539504 B4GALT5O43286 388 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 HNRNPRO43390 633 aaKnown RBP11.58□□□□□ -0.56
SYNE1-237ENST00000539504 CSDE1O75534 798 aaKnown RBP11.58□□□□□ -0.56
SYNE1-237ENST00000539504 GJB1P08034 283 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 NFICP08651 508 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 ABCE1P61221 599 aaKnown RBP11.58□□□□□ -0.56
SYNE1-237ENST00000539504 MRPS22P82650 360 aaKnown RBP11.58□□□□□ -0.56
SYNE1-237ENST00000539504 LAMTOR4Q0VGL1 99 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 KCNT2Q6UVM3 1135 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 PACS1Q6VY07 963 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 TMEM192Q8IY95 271 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 TFB1MQ8WVM0 346 aaKnown RBP11.58□□□□□ -0.56
SYNE1-237ENST00000539504 ZDHHC7Q9NXF8 308 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 TMEM216Q9P0N5 145 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 DCDC2Q9UHG0 476 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 NRXN2Q9P2S2 1712 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 BCLAF3A2AJT9 711 aaKnown RBP11.58□□□□□ -0.56
SYNE1-237ENST00000539504 GRK2P25098 689 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 GPD2P43304 727 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 TUBB3Q13509 450 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 NXNQ6DKJ4 435 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 TRNP1Q6NT89 227 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 FBXL19Q6PCT2 694 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 MCUQ8NE86 351 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 DCUN1D1Q96GG9 259 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 HAPLN3Q96S86 360 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 ACSS2Q9NR19 701 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 NDUFA13Q9P0J0 144 aa11.58□□□□□ -0.56
SYNE1-237ENST00000539504 NOP56O00567 594 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 ALDOAP04075 364 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 CPA3P15088 417 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 CNTFP26441 200 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 MGAT1P26572 445 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 USP46P62068 366 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 XIAPP98170 497 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 CNTN2Q02246 1040 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 FSTL1Q12841 308 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 RARS2Q5T160 578 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 FAM160B1Q5W0V3 765 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 MPZL3Q6UWV2 235 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 CMC1Q7Z7K0 106 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 PQLC1Q8N2U9 271 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 DGCR14Q96DF8 476 aaKnown RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 GCOM2Q9BZD3 368 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 PREBQ9HCU5 417 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 TSPAN16Q9UKR8 245 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 EMCNQ9ULC0 261 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 LZTS1Q9Y250 596 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 F7P08709 466 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-237ENST00000539504 ERVK-10P10266 1014 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 P4HA1P13674 534 aa11.57□□□□□ -0.56
SYNE1-237ENST00000539504 SAT1P21673 171 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms