RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RAD23BP54727 409 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 YWHAGP61981 247 aaKnown RBP eCLIP14.21□□□□□ -0.13
SS18-204ENST00000539244 BNC1Q01954 994 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 SCAPQ12770 1279 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 CAMK2GQ13555 558 aaPredicted RBP14.21□□□□□ -0.13
SS18-204ENST00000539244 PKP1Q13835 747 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 TRIP4Q15650 581 aaPredicted RBP14.21□□□□□ -0.13
SS18-204ENST00000539244 ZCWPW2Q504Y3 356 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 ZNF394Q53GI3 561 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 PM20D1Q6GTS8 502 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 ANKRD52Q8NB46 1076 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 SLC4A11Q8NBS3 891 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 TMEM176AQ96HP8 235 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 HEXIM2Q96MH2 286 aaKnown RBP14.21□□□□□ -0.13
SS18-204ENST00000539244 CISHQ9NSE2 258 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 STOML2Q9UJZ1 356 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 PCDHGB2Q9Y5G2 931 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 KNL1Q8NG31 2342 aa14.21□□□□□ -0.13
SS18-204ENST00000539244 MUC22E2RYF6 1773 aaPredicted RBP14.21□□□□□ -0.13
SS18-204ENST00000539244 ADAMTS20P59510 1910 aa14.21□□□□□ -0.14
SS18-204ENST00000539244 NUMA1Q14980 2115 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 SLC12A8A0AV02 714 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 EPHX1P07099 455 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 ACADMP11310 421 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 HOXD9P28356 352 aaPredicted RBP14.2□□□□□ -0.14
SS18-204ENST00000539244 MATKP42679 507 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 ZNF445P59923 1031 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 DPYDQ12882 1025 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 ADAM9Q13443 819 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 SERPINA13PQ6UXR4 307 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 RSRC2Q7L4I2 434 aaKnown RBP14.2□□□□□ -0.14
SS18-204ENST00000539244 BHLHA9Q7RTU4 235 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 SLCO6A1Q86UG4 719 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 PNPLA1Q8N8W4 532 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 FBXL13Q8NEE6 735 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 OR2T3Q8NH03 318 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 DDI1Q8WTU0 396 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 SEMA4DQ92854 862 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 CCDC47Q96A33 483 aaKnown RBP14.2□□□□□ -0.14
SS18-204ENST00000539244 CIPCQ9C0C6 399 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 MIR1-1HGQ9H1L0 117 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 TMEM245Q9H330 911 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 GAREM1Q9H706 876 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 IL21RQ9HBE5 538 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 OSGEPQ9NPF4 335 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 TM7SF3Q9NS93 570 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 OLA1Q9NTK5 396 aaKnown RBP14.2□□□□□ -0.14
SS18-204ENST00000539244 EIF2B4Q9UI10 523 aaKnown RBP14.2□□□□□ -0.14
SS18-204ENST00000539244 FNDC3AQ9Y2H6 1198 aaKnown RBP14.2□□□□□ -0.14
SS18-204ENST00000539244 GPSM3Q9Y4H4 160 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 ACACAQ13085 2346 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 CELSR3Q9NYQ7 3312 aa14.2□□□□□ -0.14
SS18-204ENST00000539244 FASNP49327 2511 aaKnown RBP14.19□□□□□ -0.14
SS18-204ENST00000539244 ZBED1O96006 694 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 PRR29P0C7W0 189 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 MXI1P50539 228 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 TKTL1P51854 596 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 SLC8A3P57103 927 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 HLA-BQ31612 363 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 EDRF1Q3B7T1 1238 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 MPPE1Q53F39 396 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 KIAA0907Q7Z7F0 614 aaPredicted RBP14.19□□□□□ -0.14
SS18-204ENST00000539244 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.19□□□□□ -0.14
SS18-204ENST00000539244 WFIKKN2Q8TEU8 576 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 SORCS1Q8WY21 1168 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 ARID3AQ99856 593 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 MMRN2Q9H8L6 949 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 FBRSQ9HAH7 460 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 RAB20Q9NX57 234 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 TOR4AQ9NXH8 423 aa14.19□□□□□ -0.14
SS18-204ENST00000539244 HBS1LQ9Y450 684 aaKnown RBP14.19□□□□□ -0.14
SS18-204ENST00000539244 APC2O95996 2303 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 LOC400499M0QZD8 3231 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 XPO1O14980 1071 aaKnown RBP14.18□□□□□ -0.14
SS18-204ENST00000539244 FLRT2O43155 660 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 LATS1O95835 1130 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 HLA-FP30511 346 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 SYKP43405 635 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 HARS2P49590 506 aaKnown RBP14.18□□□□□ -0.14
SS18-204ENST00000539244 AFF3P51826 1226 aaKnown RBP14.18□□□□□ -0.14
SS18-204ENST00000539244 ACAP1Q15027 740 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 TMPRSS7Q7RTY8 843 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 FMNL3Q8IVF7 1028 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 HSCBQ8IWL3 235 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 SCML4Q8N228 414 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 CDC6Q99741 560 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 ULBP1Q9BZM6 244 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 LHX5Q9H2C1 402 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 CCDC86Q9H6F5 360 aaKnown RBP14.18□□□□□ -0.14
SS18-204ENST00000539244 DKK4Q9UBT3 224 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 MAPK8IP1Q9UQF2 711 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.18□□□□□ -0.14
SS18-204ENST00000539244 NBEAQ8NFP9 2946 aa14.18□□□□□ -0.14
SS18-204ENST00000539244 STX10O60499 249 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 HSP90AA1P07900 732 aaKnown RBP14.17□□□□□ -0.14
SS18-204ENST00000539244 HLA-EP13747 358 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 ACSL1P33121 698 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 GRIA4P48058 902 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 NDUFA8P51970 172 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 BCAT1P54687 386 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms