RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-216	ENST00000538235	ALAD	P13716	330 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	TCF4	P15884	667 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	GALC	P54803	685 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	HDAC4	P56524	1084 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	COG7	P83436	770 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	ATP11A	P98196	1134 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	RING1	Q06587	406 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	NME3	Q13232	169 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	NNT	Q13423	1086 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	GAS6	Q14393	721 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	ITPRIPL2	Q3MIP1	535 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	FYB2	Q5VWT5	728 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	RNF43	Q68DV7	783 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	DNAJC24	Q6P3W2	148 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	RAD9B	Q6WBX8	426 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	TPGS1	Q6ZTW0	290 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	C14orf80	Q86SX3	495 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	ZNF683	Q8IZ20	524 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	ATRIP	Q8WXE1	791 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	BTBD6	Q96KE9	485 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	SERPINB11	Q96P15	392 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	PEBP4	Q96S96	227 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	CDK5RAP1	Q96SZ6	601 aa	Known RBP	13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	PRMT1	Q99873	361 aa	Known RBP	13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	GRPEL1	Q9HAV7	217 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	LTB4R2	Q9NPC1	389 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	CNOT8	Q9UFF9	292 aa	Known RBP	13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	FBXL21	Q9UKT6	434 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	STRIP2	Q9ULQ0	834 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	NEU3	Q9UQ49	428 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	CKAP5	Q14008	2032 aa		13.61	□□□□□ -0.23
CHFR-216	ENST00000538235	SIGLEC16	A6NMB1	481 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CAPN9	O14815	690 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	ACSL4	O60488	711 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	TSPAN3	O60637	253 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	ENDOD1	O94919	500 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	PENK	P01210	267 aa	Predicted RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	HOXD9	P28356	352 aa	Predicted RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CXCR3	P49682	368 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CDK17	Q00537	523 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	PON2	Q15165	354 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	SLC18A3	Q16572	532 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CDO1	Q16878	200 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	SLC25A52	Q3SY17	297 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CC2D1A	Q6P1N0	951 aa	Predicted RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	ALKBH5	Q6P6C2	394 aa	Known RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235		Q6ZS52	159 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	ARC	Q7LC44	396 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	TADA2B	Q86TJ2	420 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CIR1	Q86X95	450 aa	Predicted RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	FAM131B	Q86XD5	332 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CNGA4	Q8IV77	575 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	DRC7	Q8IY82	874 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	FANCM	Q8IYD8	2048 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CCDC185	Q8N715	623 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	KIAA1958	Q8N8K9	716 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	CENPI	Q92674	756 aa	Predicted RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	ATP2A3	Q93084	1043 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	PGAP3	Q96FM1	320 aa	Predicted RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	SPHK2	Q9NRA0	654 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	POLR3B	Q9NW08	1133 aa	Predicted RBP	13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	MARK1	Q9P0L2	795 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	MYO1A	Q9UBC5	1043 aa		13.6	□□□□□ -0.23
CHFR-216	ENST00000538235	RCCD1	A6NED2	376 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	TMEM191C	A6NGB0	347 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	HOXC11	O43248	304 aa	Predicted RBP	13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	NFATC1	O95644	943 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	EGF	P01133	1207 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	ADH5	P11766	374 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	KRT3	P12035	628 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	GPD1	P21695	349 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	PTPN9	P43378	593 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	RPS24	P62847	133 aa	Known RBP	13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	PFKP	Q01813	784 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	KDSR	Q06136	332 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	MS4A13	Q5J8X5	152 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	CCDC122	Q5T0U0	273 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	RAP1GAP2	Q684P5	730 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	CPXM2	Q8N436	756 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	CPA6	Q8N4T0	437 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	NAT16	Q8N8M0	369 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	PJA1	Q8NG27	643 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	OR52K2	Q8NGK3	314 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	CSGALNACT1	Q8TDX6	532 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	GOLGA1	Q92805	767 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	LRFN3	Q9BTN0	628 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	SELENOO	Q9BVL4	669 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	ZDHHC4	Q9NPG8	344 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	THG1L	Q9NWX6	298 aa	Known RBP	13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	ARHGEF38	Q9NXL2	777 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	WDR35	Q9P2L0	1181 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	LSM7	Q9UK45	103 aa	Known RBP	13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	NDRG2	Q9UN36	371 aa	Known RBP	13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	HS3ST4	Q9Y661	456 aa		13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	BZW2	Q9Y6E2	419 aa	Known RBP	13.59	□□□□□ -0.23
CHFR-216	ENST00000538235	NEDD8-MDP1	E9PL57	170 aa		13.58	□□□□□ -0.24
CHFR-216	ENST00000538235	CACNG3	O60359	315 aa		13.58	□□□□□ -0.24
CHFR-216	ENST00000538235	TULP3	O75386	442 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms