RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 C10orf88Q9H8K7 445 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 ETNK1Q9HBU6 452 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 CSNK1G1Q9HCP0 422 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 DMAP1Q9NPF5 467 aaPredicted RBP6.85□□□□□ -1.31
USP28-206ENST00000538224 MTMR10Q9NXD2 777 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 IGSF9Q9P2J2 1179 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 PRKAG3Q9UGI9 489 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 PHTF1Q9UMS5 762 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 ST3GAL5Q9UNP4 418 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 PCDHA11Q9Y5I1 949 aa6.85□□□□□ -1.31
USP28-206ENST00000538224 ARL5CA6NH57 179 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 FAM159BA6NKW6 160 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 RNF103O00237 685 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 COPEO14579 308 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 KLF11O14901 512 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 INPPL1O15357 1258 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 PSMD3O43242 534 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 MFSD11O43934 449 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 BANF1O75531 89 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 RASSF9O75901 435 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 LTFP02788 710 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ATP5BP06576 529 aaKnown RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 PGAM1P18669 254 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 TYMPP19971 482 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 CCNFP41002 786 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 GARSP41250 739 aaKnown RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 TM4SF4P48230 202 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 RASSF2P50749 326 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 MAP3K7CLP57077 242 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 TPI1P60174 286 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 TSPY1Q01534 308 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 GAD2Q05329 585 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 IFRD2Q12894 506 aaPredicted RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 TUSC3Q13454 348 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 DPYSQ14117 519 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 FRG1Q14331 258 aaKnown RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 EFTUD2Q15029 972 aaKnown RBP eCLIP6.84□□□□□ -1.31
USP28-206ENST00000538224 UPP1Q16831 310 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 PARP6Q2NL67 630 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 KBTBD12Q3ZCT8 623 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 RAB6CQ53S08 254 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ANKRD20A2Q5SQ80 823 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ZNF618Q5T7W0 954 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ANKRD20A1Q5TYW2 823 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ANKRD20A3Q5VUR7 823 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ARMC3Q5W041 872 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 STEAP4Q687X5 459 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ITPRIPL1Q6GPH6 555 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 LRRC8BQ6P9F7 803 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 C4orf50Q6ZRC1 276 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 RFX8Q6ZV50 586 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 PAQR9Q6ZVX9 377 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 MARK2Q7KZI7 788 aaKnown RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 CAND1Q86VP6 1230 aaKnown RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 SUGP1Q8IWZ8 645 aaKnown RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 CTAGE3PQ8IX95 158 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 REM2Q8IYK8 340 aaPredicted RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 THEM5Q8N1Q8 247 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 CCDC63Q8NA47 563 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ARRDC4Q8NCT1 418 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 SLC7A14Q8TBB6 771 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 CCDC110Q8TBZ0 833 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ACMSDQ8TDX5 336 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 DEPDC1BQ8WUY9 529 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 TTC17Q96AE7 1141 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 STAMBPL1Q96FJ0 436 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ZFP42Q96MM3 310 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 RAB3IPQ96QF0 476 aaPredicted RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 GAD1Q99259 594 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 WDR83Q9BRX9 315 aaKnown RBP6.84□□□□□ -1.31
USP28-206ENST00000538224 TUBB6Q9BUF5 446 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 ULBP1Q9BZM6 244 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 RAB6CQ9H0N0 254 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 SLC40A1Q9NP59 571 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 MLXIPLQ9NP71 852 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 XPNPEP3Q9NQH7 507 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 TRHDEQ9UKU6 1024 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 TLL2Q9Y6L7 1015 aa6.84□□□□□ -1.31
USP28-206ENST00000538224 SHROOM3Q8TF72 1996 aa6.84□□□□□ -1.32
USP28-206ENST00000538224 UTRNP46939 3433 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 A0A0U1RQF3 1178 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 A0A1W2PPM1 405 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SDR42E2A6NKP2 422 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 I3L4J1 428 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 M0QZQ0 153 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 DNM1LO00429 736 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 DCLK1O15075 740 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 FGF10O15520 208 aaPredicted RBP6.83□□□□□ -1.32
USP28-206ENST00000538224 HCRTO43612 131 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 ADAMTS4O75173 837 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 ALDH1A2O94788 518 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 UBOX5O94941 541 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TGDSO95455 350 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 METTL18O95568 372 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 CHRNA1P02708 482 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 POLBP06746 335 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 CTSHP09668 335 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 NEFHP12036 1026 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 NCAM1P13591 858 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TFE3P19532 575 aaPredicted RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms