RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SLC6A4P31645 630 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 SGSHP51688 502 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 COPB1P53618 953 aaKnown RBP15.39■□□□□ 0.05
USP28-204ENST00000537642 ZNF445P59923 1031 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 YWHAZP63104 245 aaKnown RBP15.39■□□□□ 0.05
USP28-204ENST00000537642 PITX1P78337 314 aaPredicted RBP15.39■□□□□ 0.05
USP28-204ENST00000537642 SPEM2Q0P670 501 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 NNTQ13423 1086 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 PLK5Q496M5 336 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 PTPN20Q4JDL3 420 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 NADSYN1Q6IA69 706 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 FAM183BPQ6ZVS7 135 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 CHPFQ8IZ52 775 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 GPR161Q8N6U8 529 aaKnown RBP15.39■□□□□ 0.05
USP28-204ENST00000537642 OLIG1Q8TAK6 271 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 AZIN2Q96A70 460 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 TMA16Q96EY4 203 aaKnown RBP15.39■□□□□ 0.05
USP28-204ENST00000537642 ZC3H10Q96K80 434 aaKnown RBP15.39■□□□□ 0.05
USP28-204ENST00000537642 SERPINB11Q96P15 392 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 TRIM62Q9BVG3 475 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 STK33Q9BYT3 514 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 SLC2A11Q9BYW1 496 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 CD248Q9HCU0 757 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 LIMA1Q9UHB6 759 aaKnown RBP15.39■□□□□ 0.05
USP28-204ENST00000537642 INVSQ9Y283 1065 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 DCHS1Q96JQ0 3298 aa15.39■□□□□ 0.05
USP28-204ENST00000537642 A0A1W2PQF6 199 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 F8VZ95 297 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 EPHB6O15197 1021 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 IRAK2O43187 625 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 IGLV3-25P01717 112 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 TPM2P07951 284 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 HOXB2P14652 356 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 ZNF18P17022 549 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 SLC11A2P49281 568 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 USP39Q53GS9 565 aaKnown RBP15.38■□□□□ 0.05
USP28-204ENST00000537642 FKBP15Q5T1M5 1219 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 PIK3R6Q5UE93 754 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 RFWD3Q6PCD5 774 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 ANKS1BQ7Z6G8 1248 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 HMGB4Q8WW32 186 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 DDX1Q92499 740 aaKnown RBP15.38■□□□□ 0.05
USP28-204ENST00000537642 LOXL4Q96JB6 756 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 NOX5Q96PH1 765 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 SLC2A13Q96QE2 648 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 GABRG3Q99928 467 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 DUSP15Q9H1R2 295 aaPredicted RBP15.38■□□□□ 0.05
USP28-204ENST00000537642 ASNSD1Q9NWL6 643 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 CACNA2D2Q9NY47 1150 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 USP18Q9UMW8 372 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 SIK3Q9Y2K2 1263 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 CEP83Q9Y592 693 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 PLXND1Q9Y4D7 1925 aa15.38■□□□□ 0.05
USP28-204ENST00000537642 WASH3PC4AMC7 463 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 LRP3O75074 770 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 GRAP2O75791 330 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 EPN2O95208 641 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 TRUB2O95900 331 aaKnown RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 GLI1P08151 1106 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 GABRG2P18507 467 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 HLA-FP30511 346 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 CDH5P33151 784 aaPredicted RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 EIF4EBP2Q13542 120 aaPredicted RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 DCAF6Q58WW2 860 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 EFHC1Q5JVL4 640 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 TAF3Q5VWG9 929 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 TMEM215Q68D42 235 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 RNF43Q68DV7 783 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 OR6B2Q6IFH4 312 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 SDE2Q6IQ49 451 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 KIAA1211LQ6NV74 962 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 CAVIN1Q6NZI2 390 aaKnown RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 OLFML1Q6UWY5 402 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 APTXQ7Z2E3 356 aaKnown RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 NOP9Q86U38 636 aaKnown RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 DEFB106AQ8N104 65 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 AOPEPQ8N6M6 819 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 IPO4Q8TEX9 1081 aaKnown RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 MYEOVQ96EZ4 313 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 IRX2Q9BZI1 471 aaPredicted RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 FAM207AQ9NSI2 230 aaPredicted RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 ELOVL2Q9NXB9 296 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 BCCIPQ9P287 314 aaKnown RBP eCLIP15.37■□□□□ 0.05
USP28-204ENST00000537642 XPO7Q9UIA9 1087 aaKnown RBP15.37■□□□□ 0.05
USP28-204ENST00000537642 RAD54BQ9Y620 910 aa15.37■□□□□ 0.05
USP28-204ENST00000537642 NUP205Q92621 2012 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 LRRC10BA6NIK2 292 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 LGALS16A8MUM7 142 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 TBL1XO60907 577 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 HSF2BPO75031 334 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 MOCS2O96007 188 aaPredicted RBP15.36■□□□□ 0.05
USP28-204ENST00000537642 BCKDHBP21953 392 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 GBP1P32455 592 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 P2RY2P41231 377 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 JAM2P57087 298 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 POLR2FP61218 127 aaKnown RBP15.36■□□□□ 0.05
USP28-204ENST00000537642 SYCP1Q15431 976 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 ANO6Q4KMQ2 910 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 ZC3H12AQ5D1E8 599 aaKnown RBP15.36■□□□□ 0.05
USP28-204ENST00000537642 PGBD3Q8N328 593 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms