RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 CIPCQ9C0C6 399 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 DNAAF2Q9NVR5 837 aaKnown RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 HESX1Q9UBX0 185 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 ARMCX3Q9UH62 379 aaPredicted RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 HBS1LQ9Y450 684 aaKnown RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 TNRC6BQ9UPQ9 1833 aaKnown RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 PCNX2A6NKB5 2137 aa8.83□□□□□ -1
USP28-203ENST00000537490 PIK3R2O00459 728 aa8.83□□□□□ -1
USP28-203ENST00000537490 NPC1O15118 1278 aa8.83□□□□□ -1
USP28-203ENST00000537490 MSI1O43347 362 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 TIMM44O43615 452 aa8.83□□□□□ -1
USP28-203ENST00000537490 SH3BP5O60239 455 aa8.83□□□□□ -1
USP28-203ENST00000537490 SYNCRIPO60506 623 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 GJB3O75712 270 aa8.83□□□□□ -1
USP28-203ENST00000537490 SMC2O95347 1197 aa8.83□□□□□ -1
USP28-203ENST00000537490 CALCAP01258 141 aa8.83□□□□□ -1
USP28-203ENST00000537490 SYPP08247 313 aa8.83□□□□□ -1
USP28-203ENST00000537490 NCAM1P13591 858 aa8.83□□□□□ -1
USP28-203ENST00000537490 HLA-EP13747 358 aa8.83□□□□□ -1
USP28-203ENST00000537490 LCP1P13796 627 aa8.83□□□□□ -1
USP28-203ENST00000537490 CD44P16070 742 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 HOXD9P28356 352 aaPredicted RBP8.83□□□□□ -1
USP28-203ENST00000537490 HLA-FP30511 346 aa8.83□□□□□ -1
USP28-203ENST00000537490 HARS2P49590 506 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 RGS7P49802 495 aa8.83□□□□□ -1
USP28-203ENST00000537490 TPMTP51580 245 aa8.83□□□□□ -1
USP28-203ENST00000537490 ZNF132P52740 706 aa8.83□□□□□ -1
USP28-203ENST00000537490 DAOAP59103 153 aa8.83□□□□□ -1
USP28-203ENST00000537490 YWHAEP62258 255 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 LRRC63Q05C16 580 aa8.83□□□□□ -1
USP28-203ENST00000537490 EIF4HQ15056 248 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 PLEKHG6Q3KR16 790 aa8.83□□□□□ -1
USP28-203ENST00000537490 MPPE1Q53F39 396 aa8.83□□□□□ -1
USP28-203ENST00000537490 WDR45BQ5MNZ6 344 aa8.83□□□□□ -1
USP28-203ENST00000537490 SYCP2LQ5T4T6 812 aa8.83□□□□□ -1
USP28-203ENST00000537490 LCLAT1Q6UWP7 414 aa8.83□□□□□ -1
USP28-203ENST00000537490 CACUL1Q86Y37 369 aa8.83□□□□□ -1
USP28-203ENST00000537490 KDF1Q8NAX2 398 aaPredicted RBP8.83□□□□□ -1
USP28-203ENST00000537490 RNF139Q8WU17 664 aa8.83□□□□□ -1
USP28-203ENST00000537490 KCTD13Q8WZ19 329 aa8.83□□□□□ -1
USP28-203ENST00000537490 DNASE2BQ8WZ79 361 aa8.83□□□□□ -1
USP28-203ENST00000537490 PRCCQ92733 491 aaPredicted RBP8.83□□□□□ -1
USP28-203ENST00000537490 GATA6Q92908 595 aa8.83□□□□□ -1
USP28-203ENST00000537490 FOXJ1Q92949 421 aa8.83□□□□□ -1
USP28-203ENST00000537490 KAT5Q92993 513 aa8.83□□□□□ -1
USP28-203ENST00000537490 SMARCE1Q969G3 411 aa8.83□□□□□ -1
USP28-203ENST00000537490 TMA16Q96EY4 203 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 SIPA1Q96FS4 1042 aa8.83□□□□□ -1
USP28-203ENST00000537490 CAMK1GQ96NX5 476 aa8.83□□□□□ -1
USP28-203ENST00000537490 IPO9Q96P70 1041 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 ABCC13Q9NSE7 274 aa8.83□□□□□ -1
USP28-203ENST00000537490 OLA1Q9NTK5 396 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 STOML2Q9UJZ1 356 aa8.83□□□□□ -1
USP28-203ENST00000537490 RALYQ9UKM9 306 aaKnown RBP8.83□□□□□ -1
USP28-203ENST00000537490 KIAA1257Q9ULG3 409 aa8.83□□□□□ -1
USP28-203ENST00000537490 ZMIZ1Q9ULJ6 1067 aa8.83□□□□□ -1
USP28-203ENST00000537490 PLXND1Q9Y4D7 1925 aa8.83□□□□□ -1
USP28-203ENST00000537490 PI4KAP42356 2102 aa8.83□□□□□ -1
USP28-203ENST00000537490 USP24Q9UPU5 2620 aa8.83□□□□□ -1
USP28-203ENST00000537490 GOLGA6L7A0A1B0GV03 622 aa8.82□□□□□ -1
USP28-203ENST00000537490 GOLGA6L4A6NEF3 574 aa8.82□□□□□ -1
USP28-203ENST00000537490 METTL12A8MUP2 240 aa8.82□□□□□ -1
USP28-203ENST00000537490 MEI4A8MW99 385 aa8.82□□□□□ -1
USP28-203ENST00000537490 EPHX1P07099 455 aa8.82□□□□□ -1
USP28-203ENST00000537490 SETSIPP0DME0 302 aa8.82□□□□□ -1
USP28-203ENST00000537490 GNSP15586 552 aa8.82□□□□□ -1
USP28-203ENST00000537490 TBXAS1P24557 533 aaPredicted RBP8.82□□□□□ -1
USP28-203ENST00000537490 BRD2P25440 801 aaKnown RBP8.82□□□□□ -1
USP28-203ENST00000537490 OXTRP30559 389 aa8.82□□□□□ -1
USP28-203ENST00000537490 FMO5P49326 533 aa8.82□□□□□ -1
USP28-203ENST00000537490 SGSHP51688 502 aa8.82□□□□□ -1
USP28-203ENST00000537490 GRIK2Q13002 908 aa8.82□□□□□ -1
USP28-203ENST00000537490 CNGA2Q16280 664 aa8.82□□□□□ -1
USP28-203ENST00000537490 ADGRF1Q5T601 910 aa8.82□□□□□ -1
USP28-203ENST00000537490 DCAF12L1Q5VU92 463 aa8.82□□□□□ -1
USP28-203ENST00000537490 PMF1Q6P1K2 205 aa8.82□□□□□ -1
USP28-203ENST00000537490 TMEM270Q6UE05 265 aa8.82□□□□□ -1
USP28-203ENST00000537490 SERPINA13PQ6UXR4 307 aa8.82□□□□□ -1
USP28-203ENST00000537490 CHST9Q7L1S5 443 aa8.82□□□□□ -1
USP28-203ENST00000537490 KIAA0907Q7Z7F0 614 aaPredicted RBP8.82□□□□□ -1
USP28-203ENST00000537490 ADIPOR2Q86V24 386 aa8.82□□□□□ -1
USP28-203ENST00000537490 SIX6OS1Q8N1H7 587 aa8.82□□□□□ -1
USP28-203ENST00000537490 SCML4Q8N228 414 aa8.82□□□□□ -1
USP28-203ENST00000537490 ZCCHC9Q8N567 271 aaKnown RBP8.82□□□□□ -1
USP28-203ENST00000537490 ZNF366Q8N895 744 aa8.82□□□□□ -1
USP28-203ENST00000537490 CADM4Q8NFZ8 388 aa8.82□□□□□ -1
USP28-203ENST00000537490 LMO3Q8TAP4 145 aa8.82□□□□□ -1
USP28-203ENST00000537490 WFDC5Q8TCV5 224 aa8.82□□□□□ -1
USP28-203ENST00000537490 CYB5D2Q8WUJ1 264 aa8.82□□□□□ -1
USP28-203ENST00000537490 SLC35F5Q8WV83 523 aa8.82□□□□□ -1
USP28-203ENST00000537490 MIR1-1HGQ9H1L0 117 aa8.82□□□□□ -1
USP28-203ENST00000537490 TMEM245Q9H330 911 aa8.82□□□□□ -1
USP28-203ENST00000537490 METTL14Q9HCE5 456 aaKnown RBP8.82□□□□□ -1
USP28-203ENST00000537490 CNGB3Q9NQW8 809 aa8.82□□□□□ -1
USP28-203ENST00000537490 ABCB8Q9NUT2 735 aa8.82□□□□□ -1
USP28-203ENST00000537490 SUSD2Q9UGT4 822 aa8.82□□□□□ -1
USP28-203ENST00000537490 MAN1B1Q9UKM7 699 aa8.82□□□□□ -1
USP28-203ENST00000537490 KLK13Q9UKR3 277 aa8.82□□□□□ -1
USP28-203ENST00000537490 PCDHB4Q9Y5E5 795 aa8.82□□□□□ -1
USP28-203ENST00000537490 PCDH15Q96QU1 1955 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms