RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 HSF2BPO75031 334 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 ECI2O75521 394 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 CD72P21854 359 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 GJC1P36383 396 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 COILP38432 576 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-208ENST00000537004 HSPA9P38646 679 aaKnown RBP12.44□□□□□ -0.42
CLIP1-208ENST00000537004 OGDHQ02218 1023 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 PIGHQ14442 188 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-208ENST00000537004 CNGA2Q16280 664 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 GPR158Q5T848 1215 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 VITQ6UXI7 678 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 ARID3BQ8IVW6 561 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-208ENST00000537004 CCDC105Q8IYK2 499 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 MYCBPAPQ8TBZ2 947 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 RUNDC3BQ96NL0 473 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 NT5C1AQ9BXI3 368 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 LRRC19Q9H756 370 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 SYNCQ9H7C4 482 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 SLC2A4RGQ9NR83 387 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 VPS18Q9P253 973 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 WNT16Q9UBV4 365 aa12.44□□□□□ -0.42
CLIP1-208ENST00000537004 SIGLEC16A6NMB1 481 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 F8VP50 259 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 RNF40O75150 1001 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 PRAMEF12O95522 483 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 ERBB2P04626 1255 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 TCF4P15884 667 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 GRIK1P39086 918 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 FNTAP49354 379 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 TXNDC8Q6A555 127 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 NIPA2Q8N8Q9 360 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 B3GALNT2Q8NCR0 500 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 EXD1Q8NHP7 514 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 MAIP1Q8WWC4 291 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 ELSPBP1Q96BH3 223 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 FUBP3Q96I24 572 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLIP1-208ENST00000537004 HERPUD2Q9BSE4 406 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 SLC46A2Q9BY10 475 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 ARHGEF3Q9NR81 526 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 WDR35Q9P2L0 1181 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 KIAA1257Q9ULG3 409 aa12.43□□□□□ -0.42
CLIP1-208ENST00000537004 SLC38A8A6NNN8 435 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 HEPACAM2A8MVW5 462 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 F11P03951 625 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 RALAP11233 206 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 KRT3P12035 628 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 RFC1P35251 1148 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-208ENST00000537004 GPD2P43304 727 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 GYS2P54840 703 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 DRG2P55039 364 aaKnown RBP12.42□□□□□ -0.42
CLIP1-208ENST00000537004 GSCP56915 257 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-208ENST00000537004 USP46P62068 366 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 PDCLQ13371 301 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 CFAP58Q5T655 872 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 ASTLQ6HA08 431 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-208ENST00000537004 LCLAT1Q6UWP7 414 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 C4orf50Q6ZRC1 276 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 ACOT1Q86TX2 421 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 XYLT1Q86Y38 959 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 IQCKQ8N0W5 287 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 MAB21L3Q8N8X9 362 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 C12orf29Q8N999 325 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 C1orf54Q8WWF1 131 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 ZIM3Q96PE6 472 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 RUFY1Q96T51 708 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 B3GNT5Q9BYG0 378 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 FOXQ1Q9C009 403 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 TBC1D17Q9HA65 648 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 HEBP1Q9NRV9 189 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 CSH1P0DML2 217 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 CSH2P0DML3 217 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 FLT3P36888 993 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 GABRB2P47870 512 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 KCNJ1P48048 391 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 RPL10AP62906 217 aaKnown RBP12.42□□□□□ -0.42
CLIP1-208ENST00000537004 KLF1Q13351 362 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-208ENST00000537004 ZNF268Q14587 947 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-208ENST00000537004 LRRC38Q5VT99 294 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 PRSS33Q8NF86 280 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 UBA3Q8TBC4 463 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 LRRC45Q96CN5 670 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 ZFYVE19Q96K21 471 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 KCNK16Q96T55 309 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 SH3GL2Q99962 352 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 HEMGNQ9BXL5 484 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 OSBPL8Q9BZF1 889 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 KLHL11Q9NVR0 708 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 TSPAN16Q9UKR8 245 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 CCL26Q9Y258 94 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 PIEZO1Q92508 2521 aa12.42□□□□□ -0.42
CLIP1-208ENST00000537004 OPA1O60313 960 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 PSMC3P17980 439 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 PSMA2P25787 234 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 CDC25CP30307 473 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 GDI1P31150 447 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 MAGEA11P43364 429 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 SNX1Q13596 522 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 STILQ15468 1287 aa12.41□□□□□ -0.42
CLIP1-208ENST00000537004 MAPRE1Q15691 268 aaKnown RBP12.41□□□□□ -0.42
CLIP1-208ENST00000537004 ATP13A4Q4VNC1 1196 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms