RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 ORC1Q13415 861 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 ZNF234Q14588 700 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 PLEKHG6Q3KR16 790 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 MPPE1Q53F39 396 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 ADGRF1Q5T601 910 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 CEP135Q66GS9 1140 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 TMEM215Q68D42 235 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 NAXDQ8IW45 347 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 FAM186BQ8IYM0 893 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 UBR7Q8N806 425 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 CCDC150Q8NCX0 1101 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 SPATA20Q8TB22 786 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 WFIKKN2Q8TEU8 576 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 SIPA1Q96FS4 1042 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 GTPBP4Q9BZE4 634 aaKnown RBP11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 RAB20Q9NX57 234 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 MARCH2Q9P0N8 246 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 STRIP2Q9ULQ0 834 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 PLXNB3Q9ULL4 1909 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 NUMA1Q14980 2115 aa11.74□□□□□ -0.53
CLSTN3-206ENST00000535668 FLNBO75369 2602 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 LOC400499M0QZD8 3231 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 A0A1B0GVL5 298 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 MUC22E2RYF6 1773 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 E9PAM4 449 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 MDM4O15151 490 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 BCAT2O15382 392 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 IRAK2O43187 625 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 SH3BP5O60239 455 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 CER1O95813 267 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 FTH1P19P0C7X4 201 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 WASP42768 502 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 SYKP43405 635 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 RPL34P49207 117 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 SLC8A3P57103 927 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 PKP1Q13835 747 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 MSANTD2Q6P1R3 559 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 BEND5Q7L4P6 421 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 TMPRSS7Q7RTY8 843 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 ADIPOR2Q86V24 386 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 OR2T3Q8NH03 318 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 IRGQQ8WZA9 623 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 PRCCQ92733 491 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 SEMA4DQ92854 862 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 CCDC47Q96A33 483 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 ELMO3Q96BJ8 720 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 LMLNQ96KR4 655 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 HEXIM2Q96MH2 286 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 ATXN2Q99700 1313 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 CDC6Q99741 560 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 CNGB3Q9NQW8 809 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 TOR4AQ9NXH8 423 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 TPX2Q9ULW0 747 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 CLEC4EQ9ULY5 219 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 SCML1Q9UN30 329 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 APOBEC2Q9Y235 224 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 GPSM3Q9Y4H4 160 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 RAD54BQ9Y620 910 aa11.73□□□□□ -0.53
CLSTN3-206ENST00000535668 SLC16A3O15427 465 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 FLRT2O43155 660 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 DFNA5O60443 496 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 SYNCRIPO60506 623 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 TSPAN3O60637 253 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 SETSIPP0DME0 302 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 HLA-FP30511 346 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 GRIA4P48058 902 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 MXI1P50539 228 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 AFF3P51826 1226 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 BCAT1P54687 386 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 YWHAGP61981 247 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 NNTQ13423 1086 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 MEA1Q16626 185 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 PTPRNQ16849 979 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 KRBA2Q6ZNG9 492 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 USP30Q70CQ3 517 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 DENND1CQ8IV53 801 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 CHCHD4Q8N4Q1 142 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 GOLGA1Q92805 767 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 TTC17Q96AE7 1141 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 ORAI3Q9BRQ5 295 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 GTPBP2Q9BX10 602 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 SCAND2PQ9GZW5 306 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 CD93Q9NPY3 652 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 SCUBE2Q9NQ36 999 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 ABCC13Q9NSE7 274 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 PLK2Q9NYY3 685 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 NUDT5Q9UKK9 219 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 ZDHHC9Q9Y397 364 aa11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 GCN1Q92616 2671 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-206ENST00000535668 PTPRQQ9UMZ3 2332 aa11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 ARID1BQ8NFD5 2236 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 O00370 1275 aa11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 PAEPP09466 180 aa11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 DLDP09622 509 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 TRIM49P0CI25 452 aa11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 TRIM49CP0CI26 452 aa11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 HARS2P49590 506 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 VASPP50552 380 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-206ENST00000535668 TKTL1P51854 596 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms