RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 WDCPQ9H6R7 721 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 PCDH10Q9P2E7 1040 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 SLC12A6Q9UHW9 1150 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 ZMYND8Q9ULU4 1186 aaPredicted RBP21.42■■□□□ 1.02
VPS28-209ENST00000528142 SCN5AQ14524 2016 aa21.42■■□□□ 1.02
VPS28-209ENST00000528142 OR6C75A6NL08 312 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 TBKBP1A7MCY6 615 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 HACD1B0YJ81 288 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 CHADO15335 359 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 MFSD11O43934 449 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 GCATO75600 419 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 CYP2C18P33260 490 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 PPP2R2AP63151 447 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 CBLBQ13191 982 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 GLIPR1L2Q4G1C9 344 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 FAM182AQ5T1J6 154 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 C1orf53Q5VUE5 145 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 SCN4BQ8IWT1 228 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 CCDC13Q8IYE1 715 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 ZBED8Q8IZ13 594 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 CCDC33Q8N5R6 958 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 PAWRQ96IZ0 340 aaKnown RBP21.41■■□□□ 1.02
VPS28-209ENST00000528142 B3GALT6Q96L58 329 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 ABCC13Q9NSE7 274 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 C5orf60A6NFR6 353 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 MAGEA6P43360 314 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 MAGEA11P43364 429 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 GNGT1P63211 74 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 STAT4Q14765 748 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 HP1BP3Q5SSJ5 553 aaPredicted RBP21.41■■□□□ 1.02
VPS28-209ENST00000528142 ZNF280DQ6N043 979 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 FUT10Q6P4F1 479 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 C4orf22Q6V702 233 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 WDR83Q9BRX9 315 aaKnown RBP21.41■■□□□ 1.02
VPS28-209ENST00000528142 TKTL2Q9H0I9 626 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 RAB6BQ9NRW1 208 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 PCDHB5Q9Y5E4 795 aa21.41■■□□□ 1.02
VPS28-209ENST00000528142 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.41■■□□□ 1.02
VPS28-209ENST00000528142 TTC3P53804 2025 aa21.4■■□□□ 1.02
VPS28-209ENST00000528142 A0A087WUV0 522 aaPredicted RBP21.4■■□□□ 1.02
VPS28-209ENST00000528142 TBC1D4O60343 1298 aa21.4■■□□□ 1.02
VPS28-209ENST00000528142 BANF1O75531 89 aa21.4■■□□□ 1.02
VPS28-209ENST00000528142 CCDC110Q8TBZ0 833 aa21.4■■□□□ 1.02
VPS28-209ENST00000528142 TFB1MQ8WVM0 346 aaKnown RBP21.4■■□□□ 1.02
VPS28-209ENST00000528142 PATJQ8NI35 1801 aa21.4■■□□□ 1.02
VPS28-209ENST00000528142 TRIM66O15016 1216 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 VAV1P15498 845 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 ERCC2P18074 760 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 MDH1P40925 334 aaKnown RBP21.39■■□□□ 1.02
VPS28-209ENST00000528142 GPR15P49685 360 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 IFRD2Q12894 506 aaPredicted RBP21.39■■□□□ 1.02
VPS28-209ENST00000528142 DDR2Q16832 855 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 LRRC26Q2I0M4 334 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 BTBD8Q5XKL5 378 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 TTC19Q6DKK2 380 aaPredicted RBP21.39■■□□□ 1.02
VPS28-209ENST00000528142 DEFB128Q7Z7B8 93 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 TMEM173Q86WV6 379 aaPredicted RBP21.39■■□□□ 1.02
VPS28-209ENST00000528142 STMN4Q9H169 189 aaPredicted RBP21.39■■□□□ 1.02
VPS28-209ENST00000528142 NMUR1Q9HB89 426 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 SCML2Q9UQR0 700 aa21.39■■□□□ 1.02
VPS28-209ENST00000528142 NT5C1B-RDH14C9J2C7 533 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 IRAK2O43187 625 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 ZNF135P52742 658 aaPredicted RBP21.39■■□□□ 1.01
VPS28-209ENST00000528142 GUCY1A3Q02108 690 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 ELAVL2Q12926 359 aaKnown RBP21.39■■□□□ 1.01
VPS28-209ENST00000528142 PRKD1Q15139 912 aaPredicted RBP21.39■■□□□ 1.01
VPS28-209ENST00000528142 SDHAF4Q5VUM1 108 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 PDIK1LQ8N165 341 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 NUP93Q8N1F7 819 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 ATAD1Q8NBU5 361 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 BCL7CQ8WUZ0 217 aaPredicted RBP21.39■■□□□ 1.01
VPS28-209ENST00000528142 HTR3CQ8WXA8 447 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 VWCEQ96DN2 955 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 PGLYRP2Q96PD5 576 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 LGMNQ99538 433 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 CCDC77Q9BR77 488 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 MCOLN1Q9GZU1 580 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 SMOC2Q9H3U7 446 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 ETNK1Q9HBU6 452 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 ARHGEF38Q9NXL2 777 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 EURLQ9NYK6 297 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 TBX21Q9UL17 535 aa21.39■■□□□ 1.01
VPS28-209ENST00000528142 CLUHO75153 1309 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 PBX3P40426 434 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 GPX6P59796 221 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 TPI1P60174 286 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 RTP2Q5QGT7 225 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 HEATR6Q6AI08 1181 aaKnown RBP21.38■■□□□ 1.01
VPS28-209ENST00000528142 RSPO2Q6UXX9 243 aaPredicted RBP21.38■■□□□ 1.01
VPS28-209ENST00000528142 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.38■■□□□ 1.01
VPS28-209ENST00000528142 ANKMY2Q8IV38 441 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 LRRC43Q8N309 656 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 TTC9BQ8N6N2 239 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 ANKLE1Q8NAG6 615 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 TANC1Q9C0D5 1861 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 KLC2Q9H0B6 622 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 OSBPL2Q9H1P3 480 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 IL37Q9NZH6 218 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 OR12D3Q9UGF7 316 aa21.38■■□□□ 1.01
VPS28-209ENST00000528142 LGALS13Q9UHV8 139 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms