RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SDR42E2A6NKP2 422 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 XPO1O14980 1071 aaKnown RBP21.91■■□□□ 1.1
VPS28-205ENST00000526204 ATP5BP06576 529 aaKnown RBP21.91■■□□□ 1.1
VPS28-205ENST00000526204 ESRRAP11474 423 aaPredicted RBP21.91■■□□□ 1.1
VPS28-205ENST00000526204 OCRLQ01968 901 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 DENND5BQ6ZUT9 1274 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 LIMS2Q7Z4I7 341 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 CDHR5Q9HBB8 845 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 SPON1Q9HCB6 807 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 HMX2A2RU54 273 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 FCHO1O14526 889 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 GSC2O15499 205 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 HCRTO43612 131 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 OPHN1O60890 802 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 TAF6P49848 677 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 CHI3L2Q15782 390 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 SV2CQ496J9 727 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 LRRC8BQ6P9F7 803 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 KYAT3Q6YP21 454 aaKnown RBP21.91■■□□□ 1.1
VPS28-205ENST00000526204 C4orf50Q6ZRC1 276 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 ACMSDQ8TDX5 336 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 CDKL2Q92772 493 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 MAML3Q96JK9 1138 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 ZNF570Q96NI8 536 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 MECRQ9BV79 373 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 MAGEB5Q9BZ81 275 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 MMADHCQ9H3L0 296 aaPredicted RBP21.91■■□□□ 1.1
VPS28-205ENST00000526204 PCMTD2Q9NV79 361 aa21.91■■□□□ 1.1
VPS28-205ENST00000526204 BPGMP07738 259 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 KCNE1P15382 129 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 AKAP5P24588 427 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 NAB1Q13506 487 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 CRYMQ14894 314 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 MARK2Q7KZI7 788 aaKnown RBP21.9■■□□□ 1.1
VPS28-205ENST00000526204 CRLF3Q8IUI8 442 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 TINF2Q9BSI4 451 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 NAT9Q9BTE0 207 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 WWP1Q9H0M0 922 aa21.9■■□□□ 1.1
VPS28-205ENST00000526204 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.9■■□□□ 1.1
VPS28-205ENST00000526204 SF3B1O75533 1304 aaKnown RBP eCLIP21.9■■□□□ 1.13e-6■■■■■ 56
VPS28-205ENST00000526204 H3BRJ5 948 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 SPTLC1O15269 473 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 HUS1O60921 280 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 ZNF189O75820 626 aaPredicted RBP21.89■■□□□ 1.1
VPS28-205ENST00000526204 VAV1P15498 845 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 EPHX2P34913 555 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 GRIA1P42261 906 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 SULT1E1P49888 294 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 TEX44Q53QW1 395 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 XKR4Q5GH76 650 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 DEFB106AQ8N104 65 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 PLCD3Q8N3E9 789 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 COLGALT1Q8NBJ5 622 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 STKLD1Q8NE28 680 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 MCUR1Q96AQ8 359 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 APOL6Q9BWW8 343 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 ARHGEF4Q9NR80 690 aa21.89■■□□□ 1.1
VPS28-205ENST00000526204 MBLAC1A4D2B0 266 aaPredicted RBP21.89■■□□□ 1.09
VPS28-205ENST00000526204 DAB1O75553 588 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 SMIM10L2AP0DMW4 78 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 SMIM10L2BP0DMW5 78 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 GRB14Q14449 540 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 DPY19L2Q6NUT2 758 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 GPR142Q7Z601 462 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 FAM131BQ86XD5 332 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 PYROXD2Q8N2H3 581 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 TRIM56Q9BRZ2 755 aaKnown RBP21.89■■□□□ 1.09
VPS28-205ENST00000526204 GJD2Q9UKL4 321 aa21.89■■□□□ 1.09
VPS28-205ENST00000526204 WDR27A2RRH5 827 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 UNCXA6NJT0 531 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 SNNO75324 88 aaPredicted RBP21.88■■□□□ 1.09
VPS28-205ENST00000526204 CYP2C9P11712 490 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 GLUD2P49448 558 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 PDK1Q15118 436 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 CASC4Q6P4E1 433 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 ADGRF2Q8IZF7 708 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 ARHGAP24Q8N264 748 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 CCDC33Q8N5R6 958 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 FAM149B1Q96BN6 582 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 LGMNQ99538 433 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 HNRNPABQ99729 332 aaKnown RBP21.88■■□□□ 1.09
VPS28-205ENST00000526204 NMUR2Q9GZQ4 415 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 PIN4Q9Y237 131 aaKnown RBP21.88■■□□□ 1.09
VPS28-205ENST00000526204 LRRC42Q9Y546 428 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 ENTPD5O75356 428 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 LUC7L3O95232 432 aaKnown RBP21.88■■□□□ 1.09
VPS28-205ENST00000526204 NOS2P35228 1153 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 STX3Q13277 289 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 PIGZQ86VD9 579 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 ARID3BQ8IVW6 561 aaPredicted RBP21.88■■□□□ 1.09
VPS28-205ENST00000526204 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.88■■□□□ 1.096e-7■■■■■ 139.2
VPS28-205ENST00000526204 B3GALNT2Q8NCR0 500 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 SMC1BQ8NDV3 1235 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 ATP2A3Q93084 1043 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 NT5C3BQ969T7 300 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 SIKE1Q9BRV8 207 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 DUSP16Q9BY84 665 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 THAP1Q9NVV9 213 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 TAS2R1Q9NYW7 299 aa21.88■■□□□ 1.09
VPS28-205ENST00000526204 MFHAS1Q9Y4C4 1052 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms