RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	PRKCQ	Q04759	706 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	DEUP1	Q05D60	604 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	SPA17	Q15506	151 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	ZC3H12A	Q5D1E8	599 aa	Known RBP	21.56	■■□□□ 1.04
CD44-222	ENST00000526025	ADGRF1	Q5T601	910 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	TRIM68	Q6AZZ1	485 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	ATP6V0D2	Q8N8Y2	350 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	NCAPG	Q9BPX3	1015 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	DDX50	Q9BQ39	737 aa	Known RBP	21.56	■■□□□ 1.04
CD44-222	ENST00000526025	ARHGEF38	Q9NXL2	777 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	MARK1	Q9P0L2	795 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	CALCOCO1	Q9P1Z2	691 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	SLC12A6	Q9UHW9	1150 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	KIAA1549L	Q6ZVL6	1849 aa		21.56	■■□□□ 1.04
CD44-222	ENST00000526025	MUC3A	Q02505	3323 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	SOWAHD	A6NJG2	315 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	GFRA2	O00451	464 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	ACSL4	O60488	711 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	IPO7	O95373	1038 aa	Known RBP	21.55	■■□□□ 1.04
CD44-222	ENST00000526025	CYP17A1	P05093	508 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	ARSA	P15289	507 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	TFE3	P19532	575 aa	Predicted RBP	21.55	■■□□□ 1.04
CD44-222	ENST00000526025	TNK2	Q07912	1038 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	NME3	Q13232	169 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	ACAP1	Q15027	740 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	TCEAL1	Q15170	157 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	DHCR24	Q15392	516 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	RALGPS2	Q86X27	583 aa	Predicted RBP	21.55	■■□□□ 1.04
CD44-222	ENST00000526025	SPHK2	Q9NRA0	654 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	GTSE1	Q9NYZ3	720 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	MYO1A	Q9UBC5	1043 aa		21.55	■■□□□ 1.04
CD44-222	ENST00000526025	HOXC11	O43248	304 aa	Predicted RBP	21.54	■■□□□ 1.04
CD44-222	ENST00000526025	MLF2	Q15773	248 aa	Predicted RBP	21.54	■■□□□ 1.04
CD44-222	ENST00000526025	SLC44A4	Q53GD3	710 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	RHBDF2	Q6PJF5	856 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	RAD9B	Q6WBX8	426 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	RHOT2	Q8IXI1	618 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	FAM172A	Q8WUF8	416 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	RNF34	Q969K3	372 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	ARHGEF26	Q96DR7	871 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	SHD	Q96IW2	340 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	PDLIM2	Q96JY6	352 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	NUP85	Q9BW27	656 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	PACSIN1	Q9BY11	444 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	WDCP	Q9H6R7	721 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	ARHGEF3	Q9NR81	526 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	FBXL21	Q9UKT6	434 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	MIA3	Q5JRA6	1907 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	TRIO	O75962	3097 aa		21.54	■■□□□ 1.04
CD44-222	ENST00000526025	SCAMP3	O14828	347 aa	Known RBP	21.53	■■□□□ 1.04
CD44-222	ENST00000526025	CCP110	O43303	1012 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	MTA2	O94776	668 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	MAGEA1	P43355	309 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	AIF1	P55008	147 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	HDAC4	P56524	1084 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	ATP11A	P98196	1134 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	OGDH	Q02218	1023 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	C15orf59	Q2T9L4	293 aa	Predicted RBP	21.53	■■□□□ 1.04
CD44-222	ENST00000526025	FAM133B	Q5BKY9	247 aa	Known RBP	21.53	■■□□□ 1.04
CD44-222	ENST00000526025	TRIM67	Q6ZTA4	783 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	NIPA2	Q8N8Q9	360 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	RFFL	Q8WZ73	363 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	NTAN1	Q96AB6	310 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	PCDHA13	Q9Y5I0	950 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	PIAS3	Q9Y6X2	628 aa		21.53	■■□□□ 1.04
CD44-222	ENST00000526025	SYNJ2BP-COX16	A0A087WUM0	186 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	OTOL1	A6NHN0	477 aa	Predicted RBP	21.52	■■□□□ 1.04
CD44-222	ENST00000526025	MAN2B1	O00754	1011 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	ADH5	P11766	374 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	PSMA2	P25787	234 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	CTH	P32929	405 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	GJA4	P35212	333 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	EIF2D	P41214	584 aa	Known RBP	21.52	■■□□□ 1.04
CD44-222	ENST00000526025	STARD6	P59095	220 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	GAD2	Q05329	585 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	ZNF252P-AS1	Q0IIN9	211 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	PIGH	Q14442	188 aa	Predicted RBP	21.52	■■□□□ 1.04
CD44-222	ENST00000526025	LY6G5C	Q5SRR4	150 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	ZNF564	Q8TBZ8	553 aa	Predicted RBP	21.52	■■□□□ 1.04
CD44-222	ENST00000526025	EXOC4	Q96A65	974 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	HAPLN3	Q96S86	360 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	HEBP1	Q9NRV9	189 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	COX16	Q9P0S2	106 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	IP6K2	Q9UHH9	426 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	DOCK4	Q8N1I0	1966 aa		21.52	■■□□□ 1.04
CD44-222	ENST00000526025	SPECC1L-ADORA2A	F8WAN1	911 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	ARHGAP6	O43182	974 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	PENK	P01210	267 aa	Predicted RBP	21.51	■■□□□ 1.03
CD44-222	ENST00000526025	CYBB	P04839	570 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	SCAP	Q12770	1279 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	CDO1	Q16878	200 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	ARL13B	Q3SXY8	428 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	MPP7	Q5T2T1	576 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	RNF43	Q68DV7	783 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	NADSYN1	Q6IA69	706 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	LRRC8A	Q8IWT6	810 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	TXLNB	Q8N3L3	684 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	C1orf74	Q96LT6	269 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	TKTL2	Q9H0I9	626 aa		21.51	■■□□□ 1.03
CD44-222	ENST00000526025	CTTNBP2NL	Q9P2B4	639 aa		21.51	■■□□□ 1.03

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