RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 HSF1Q00613 529 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 FAM110CQ1W6H9 321 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 SLC9C1Q4G0N8 1177 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 EARS2Q5JPH6 523 aaKnown RBP4.64□□□□□ -1.67
CD44-217ENST00000525348 FBXO38Q6PIJ6 1188 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 IRF2BP2Q7Z5L9 587 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 C9orf106Q8NAJ2 232 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 OR52L2PQ8NGH6 319 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 OVCA2Q8WZ82 227 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 CELF1Q92879 486 aaKnown RBP4.64□□□□□ -1.67
CD44-217ENST00000525348 NUDT22Q9BRQ3 303 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 ELOVL1Q9BW60 279 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 ZMYM2Q9UBW7 1377 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 SOCS2O14508 198 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 NPC1O15118 1278 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 KAT7O95251 611 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 MATN1P21941 496 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 MMP8P22894 467 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 RPS6KB1P23443 525 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 MTA1Q13330 715 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 PICALMQ13492 652 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 STIM1Q13586 685 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 GRM4Q14833 912 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 P3H1Q32P28 736 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 MAP9Q49MG5 647 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 AWAT2Q6E213 333 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 RBM44Q6ZP01 1051 aaKnown RBP4.63□□□□□ -1.67
CD44-217ENST00000525348 TECPR1Q7Z6L1 1165 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 UBE2Q1Q7Z7E8 422 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 SRLQ86TD4 932 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 RASGRP3Q8IV61 690 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.63□□□□□ -1.67
CD44-217ENST00000525348 ZNF548Q8NEK5 533 aaPredicted RBP4.63□□□□□ -1.67
CD44-217ENST00000525348 SLC22A17Q8WUG5 538 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 GLMPQ8WWB7 406 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 NPIPB3Q92617 1050 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 PIGKQ92643 395 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 GJA10Q969M2 543 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 CCDC136Q96JN2 1154 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 MYD88Q99836 296 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 STK33Q9BYT3 514 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 EPS8L2Q9H6S3 715 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 NECTIN3Q9NQS3 549 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 PI4KBQ9UBF8 816 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 SLC39A10Q9ULF5 831 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.63□□□□□ -1.67
CD44-217ENST00000525348 PCDHB7Q9Y5E2 793 aa4.63□□□□□ -1.67
CD44-217ENST00000525348 M0QYT0 321 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 CENPBP07199 599 aaPredicted RBP4.62□□□□□ -1.67
CD44-217ENST00000525348 CPA2P48052 419 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 DMWDQ09019 674 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 LAMB3Q13751 1172 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 XRRA1Q6P2D8 792 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 MRPL10Q7Z7H8 261 aaKnown RBP4.62□□□□□ -1.67
CD44-217ENST00000525348 RHPN2Q8IUC4 686 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 LAS2Q8IYD9 372 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 DEPTORQ8TB45 409 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 ASB12Q8WXK4 309 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 ZNF845Q96IR2 970 aaPredicted RBP4.62□□□□□ -1.67
CD44-217ENST00000525348 VCPIP1Q96JH7 1222 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 SENP7Q9BQF6 1050 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 KCNK9Q9NPC2 374 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 TM7SF3Q9NS93 570 aa4.62□□□□□ -1.67
CD44-217ENST00000525348 PNMA6EA0A0J9YXQ4 647 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 HNRNPDLO14979 420 aaKnown RBP4.61□□□□□ -1.67
CD44-217ENST00000525348 PIP5K1BO14986 540 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 NTN1O95631 604 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 NTSR2O95665 410 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 BMP15O95972 392 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 FGF2P09038 288 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 PEPDP12955 493 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 KLRK1P26718 216 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 SERPINB3P29508 390 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 LINC00205P59089 165 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 MTX1Q13505 466 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 ZNF260Q3ZCT1 412 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 DGKKQ5KSL6 1271 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 ANKRD13BQ86YJ7 626 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 HMCESQ96FZ2 354 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 GPR78Q96P69 363 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 EIF3CQ99613 913 aaKnown RBP4.61□□□□□ -1.67
CD44-217ENST00000525348 PAAF1Q9BRP4 392 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 FOXP1Q9H334 677 aaPredicted RBP4.61□□□□□ -1.67
CD44-217ENST00000525348 MOV10Q9HCE1 1003 aaKnown RBP4.61□□□□□ -1.67
CD44-217ENST00000525348 CDC23Q9UJX2 597 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 CA14Q9ULX7 337 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 B3GNT3Q9Y2A9 372 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 CEP83Q9Y592 693 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 NISCHQ9Y2I1 1504 aa4.61□□□□□ -1.67
CD44-217ENST00000525348 LOC105369274A0A096LPK9 316 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 LOC102723532A0A0G2JNH3 316 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 TTC34A8MYJ7 566 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 CER1O95813 267 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 ANXA6P08133 673 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 RFPL3SP0C7P2 107 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 TNFRSF1BP20333 461 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 SLC8A1P32418 973 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 LEXMQ3ZCV2 418 aa4.6□□□□□ -1.67
CD44-217ENST00000525348 ARL6IP4Q66PJ3 421 aaKnown RBP4.6□□□□□ -1.67
CD44-217ENST00000525348 CCSAPQ6IQ19 270 aaPredicted RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms