RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 SDCCAG3Q96C92 435 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 VPS50Q96JG6 964 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 GPR63Q9BZJ6 419 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 ABHD16BQ9H3Z7 469 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 PLEKHA2Q9HB19 425 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 KLC4Q9NSK0 619 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 TMEM160Q9NX00 188 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 EHD3Q9NZN3 535 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 FBXO9Q9UK97 447 aaPredicted RBP6.56□□□□□ -1.36
SKP1-213ENST00000524288 ZBTB1Q9Y2K1 713 aa6.56□□□□□ -1.36
SKP1-213ENST00000524288 EPN1Q9Y6I3 576 aaPredicted RBP6.56□□□□□ -1.36
SKP1-213ENST00000524288 PEX1O43933 1283 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 EGR2P11161 476 aaPredicted RBP6.55□□□□□ -1.36
SKP1-213ENST00000524288 ZFXP17010 805 aaPredicted RBP6.55□□□□□ -1.36
SKP1-213ENST00000524288 ENGP17813 658 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 KRT9P35527 623 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 NR1H2P55055 460 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 TLE2Q04725 743 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 CHRNDQ07001 517 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 EFR3AQ14156 821 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 KCNJ12Q14500 433 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 AAK1Q2M2I8 961 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 TEDDM1Q5T9Z0 273 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 MAP3K21Q5TCX8 1036 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 ANKS1BQ7Z6G8 1248 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 RFKQ969G6 155 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 FUBP1Q96AE4 644 aaKnown RBP6.55□□□□□ -1.36
SKP1-213ENST00000524288 CTHRC1Q96CG8 243 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 RBM17Q96I25 401 aaKnown RBP6.55□□□□□ -1.36
SKP1-213ENST00000524288 PGBD1Q96JS3 809 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 PAAF1Q9BRP4 392 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 ARHGAP39Q9C0H5 1083 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 SYNPO2LQ9H987 977 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 NOD2Q9HC29 1040 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 NFU1Q9UMS0 254 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 ARHGAP26Q9UNA1 814 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 PCDHA10Q9Y5I2 948 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 NACADO15069 1562 aa6.55□□□□□ -1.36
SKP1-213ENST00000524288 CCDC187A0A096LP49 1063 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 GXYLT2A0PJZ3 443 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 A8MVJ9 347 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 KLK10O43240 276 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 PROM1O43490 865 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 PDE8BO95263 885 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 TBX18O95935 607 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 CSF1P09603 554 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 ITPKBP27987 946 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 CXCR5P32302 372 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 ELF1P32519 619 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 SUMO2P61956 95 aaKnown RBP6.54□□□□□ -1.36
SKP1-213ENST00000524288 PSG6Q00889 435 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 ATG16L1Q676U5 607 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 KIAA1324Q6UXG2 1013 aaKnown RBP6.54□□□□□ -1.36
SKP1-213ENST00000524288 ADGRG3Q86Y34 549 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 RAB11FIP4Q86YS3 637 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 TCP11L2Q8N4U5 519 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 FAM71DQ8N9W8 422 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 VOPP1Q96AW1 172 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 ZNF764Q96H86 408 aaPredicted RBP6.54□□□□□ -1.36
SKP1-213ENST00000524288 PBKQ96KB5 322 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 SENP7Q9BQF6 1050 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 REEP2Q9BRK0 252 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 ALG8Q9BVK2 526 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 HERC2P3Q9BVR0 1158 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 SLC13A4Q9UKG4 626 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 BAG5Q9UL15 447 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 SLC12A4Q9UP95 1085 aa6.54□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3DA0A087WVF3 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3IA0A087WXS9 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3EA0A087X179 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3KA0A087X1G2 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 VWA3AA6NCI4 1184 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3BA6NDS4 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3FA6NER0 549 aaPredicted RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3LB9A6J9 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TFRCP02786 760 aaKnown RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 CNPP09543 421 aaKnown RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 IFIT1P09914 478 aaKnown RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3HP0C7X1 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 FPR3P25089 353 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 ADRA1DP25100 572 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 PCSK6P29122 969 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 DGKQP52824 942 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 RPL15P61313 204 aaKnown RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 TDGQ13569 410 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 BMPR2Q13873 1038 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 L1TD1Q5T7N2 865 aaKnown RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 SLC9C2Q5TAH2 1124 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3GQ6DHY5 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 FAAH2Q6GMR7 532 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3CQ6IPX1 549 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 C1orf122Q6ZSJ8 110 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 Q6ZWC4 215 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TBC1D3Q8IZP1 549 aaPredicted RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 SIRT6Q8N6T7 355 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 PCYOX1LQ8NBM8 494 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 CLEC4CQ8WTT0 213 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 KTI12Q96EK9 354 aaPredicted RBP6.53□□□□□ -1.36
SKP1-213ENST00000524288 USP29Q9HBJ7 922 aa6.53□□□□□ -1.36
SKP1-213ENST00000524288 TRIM36Q9NQ86 728 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms