RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PDCL3Q9H2J4 239 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 SMOC1Q9H4F8 434 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 BCCIPQ9P287 314 aaKnown RBP eCLIP11.97□□□□□ -0.49
VCAN-212ENST00000515397 FBXO10Q9UK96 956 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 USP18Q9UMW8 372 aa11.97□□□□□ -0.49
VCAN-212ENST00000515397 ACSL4O60488 711 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 TBL1XO60907 577 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 GFPT2O94808 682 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 CYBBP04839 570 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 MMEP08473 750 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 CYP11B1P15538 503 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 BCKDHBP21953 392 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 TGM1P22735 817 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 HOXD9P28356 352 aaPredicted RBP11.96□□□□□ -0.49
VCAN-212ENST00000515397 GBP1P32455 592 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 YWHAZP63104 245 aaKnown RBP11.96□□□□□ -0.49
VCAN-212ENST00000515397 SYCP1Q15431 976 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 DCAF6Q58WW2 860 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 FAM133BQ5BKY9 247 aaKnown RBP11.96□□□□□ -0.49
VCAN-212ENST00000515397 EOGTQ5NDL2 527 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 ADGRF1Q5T601 910 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 TMEM215Q68D42 235 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 CFAP52Q8N1V2 620 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 DEFB119Q8N690 84 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 WFDC5Q8TCV5 224 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 CPA5Q8WXQ8 436 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 STK33Q9BYT3 514 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 NUCKS1Q9H1E3 243 aaKnown RBP11.96□□□□□ -0.49
VCAN-212ENST00000515397 ARRDC1-AS1Q9H2J1 176 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 SYNCQ9H7C4 482 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 LIMA1Q9UHB6 759 aaKnown RBP11.96□□□□□ -0.49
VCAN-212ENST00000515397 GMEB2Q9UKD1 530 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 PCDHGC3Q9UN70 934 aa11.96□□□□□ -0.49
VCAN-212ENST00000515397 SPTBN2O15020 2390 aa11.96□□□□□ -0.5
VCAN-212ENST00000515397 A0A1W2PQF6 199 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 F8VZ95 297 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 GFRA2O00451 464 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 TEX33O43247 280 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 TRUB2O95900 331 aaKnown RBP11.95□□□□□ -0.5
VCAN-212ENST00000515397 IGLV3-27P01718 113 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 RETP07949 1114 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 HOXB2P14652 356 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 ZNF18P17022 549 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 TFE3P19532 575 aaPredicted RBP11.95□□□□□ -0.5
VCAN-212ENST00000515397 NTSR1P30989 418 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 CNR2P34972 360 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 RPS24P62847 133 aaKnown RBP11.95□□□□□ -0.5
VCAN-212ENST00000515397 ARID5AQ03989 594 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 UBXN1Q04323 297 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 PLK5Q496M5 336 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 PREPLQ4J6C6 727 aaPredicted RBP11.95□□□□□ -0.5
VCAN-212ENST00000515397 MPPE1Q53F39 396 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 FKBP15Q5T1M5 1219 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 PIK3R6Q5UE93 754 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 LAIR1Q6GTX8 287 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 NUDT18Q6ZVK8 323 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 CACNA2D4Q7Z3S7 1137 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 FAM217AQ8IXS0 508 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 CPXM2Q8N436 756 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 CCDC26Q8TAB7 109 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 CYB5D2Q8WUJ1 264 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 DDX1Q92499 740 aaKnown RBP11.95□□□□□ -0.5
VCAN-212ENST00000515397 CIPCQ9C0C6 399 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 DUSP15Q9H1R2 295 aaPredicted RBP11.95□□□□□ -0.5
VCAN-212ENST00000515397 LHX5Q9H2C1 402 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 POPDC2Q9HBU9 364 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 CD93Q9NPY3 652 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 ABCB8Q9NUT2 735 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 EBF1Q9UH73 591 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 SIK3Q9Y2K2 1263 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 STARD13Q9Y3M8 1113 aa11.95□□□□□ -0.5
VCAN-212ENST00000515397 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.95□□□□□ -0.5
VCAN-212ENST00000515397 CCDC163A0A0D9SF12 145 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 GOLGA8SH3BPF8 625 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 SART1O43290 800 aaKnown RBP11.94□□□□□ -0.5
VCAN-212ENST00000515397 GDF9O60383 454 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 ALDH1A2O94788 518 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 TPM2P07951 284 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 HLA-EP13747 358 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 GABRG2P18507 467 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 HLA-FP30511 346 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 CD70P32970 193 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 GGCXP38435 758 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 IL12RB1P42701 662 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 SLC11A2P49281 568 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 BPIFB4P59827 614 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 NME3Q13232 169 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 SF3A2Q15428 464 aaKnown RBP11.94□□□□□ -0.5
VCAN-212ENST00000515397 MEA1Q16626 185 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 USP39Q53GS9 565 aaKnown RBP11.94□□□□□ -0.5
VCAN-212ENST00000515397 NAA35Q5VZE5 725 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 SDE2Q6IQ49 451 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 OLFML1Q6UWY5 402 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 MMS22LQ6ZRQ5 1243 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 ARMCX6Q7L4S7 300 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 APTXQ7Z2E3 356 aaKnown RBP11.94□□□□□ -0.5
VCAN-212ENST00000515397 RASSF3Q86WH2 238 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 UNC45BQ8IWX7 931 aa11.94□□□□□ -0.5
VCAN-212ENST00000515397 DHX40Q8IX18 779 aaKnown RBP11.94□□□□□ -0.5
VCAN-212ENST00000515397 ZNF366Q8N895 744 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms