RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 E9PAM4 449 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 TK2O00142 265 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 TSPAN3O60637 253 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 PSEN1P49768 467 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 CLDN10P78369 228 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 DNAJC3Q13217 504 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 FNDC3BQ53EP0 1204 aaKnown RBP21.29■■□□□ 1
SQSTM1-215ENST00000514093 LRRC69Q6ZNQ3 347 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 CCDC186Q7Z3E2 898 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 C12orf56Q8IXR9 622 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 NXPE2Q96DL1 559 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 C7orf25Q9BPX7 421 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 BTBD1Q9H0C5 482 aa21.29■■□□□ 1
SQSTM1-215ENST00000514093 SLC12A8A0AV02 714 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 TIMM44O43615 452 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 PLA2G2AP14555 144 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 CD27P26842 260 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 RPS14P62263 151 aaKnown RBP21.28■■□□□ 1
SQSTM1-215ENST00000514093 EHHADHQ08426 723 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 E2F5Q15329 346 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 KNOP1Q1ED39 458 aaKnown RBP21.28■■□□□ 1
SQSTM1-215ENST00000514093 UNC13DQ70J99 1090 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 ORAI3Q9BRQ5 295 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 PNPLA8Q9NP80 782 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 CLIC5Q9NZA1 410 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 USP3Q9Y6I4 520 aa21.28■■□□□ 1
SQSTM1-215ENST00000514093 ENC1O14682 589 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 STX6O43752 255 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 SYT1P21579 422 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 TARDBPQ13148 414 aaKnown RBP eCLIP21.27■■□□□ 1
SQSTM1-215ENST00000514093 ZACNQ401N2 412 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 C6orf118Q5T5N4 469 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 CNNM4Q6P4Q7 775 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 ZNF605Q86T29 641 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 ZNF276Q8N554 614 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 FCRL3Q96P31 734 aaPredicted RBP21.27■■□□□ 1
SQSTM1-215ENST00000514093 SLC2A11Q9BYW1 496 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 TMEM245Q9H330 911 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 MARCH2Q9P0N8 246 aa21.27■■□□□ 1
SQSTM1-215ENST00000514093 CGNQ9P2M7 1197 aaKnown RBP21.27■■□□□ 1
SQSTM1-215ENST00000514093 MUC22E2RYF6 1773 aaPredicted RBP21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 A0A1B0GTQ1 180 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 FAM47DPA6NHR8 397 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 ASS1P00966 412 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 DNTTP04053 509 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 RPN1P04843 607 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 CD58P19256 250 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 PDCP20941 246 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 HLA-FP30511 346 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 BCAT1P54687 386 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 C21orf59P57076 290 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 STK38Q15208 465 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 INAVAQ3KP66 663 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 SV2AQ7L0J3 742 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 RSRC2Q7L4I2 434 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 CPXM2Q8N436 756 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 ZNF843Q8N446 348 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 CNDP2Q96KP4 475 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 CDK5RAP1Q96SZ6 601 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 ARID3AQ99856 593 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 NT5C1AQ9BXI3 368 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 DUSP16Q9BY84 665 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 CUEDC2Q9H467 287 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 PRSS16Q9NQE7 514 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 PLA2G4CQ9UP65 541 aa21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 MORC2Q9Y6X9 1032 aaPredicted RBP21.26■□□□□ 0.99
SQSTM1-215ENST00000514093 KNTC1P50748 2209 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 IGHV4-34P06331 123 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 TRIM21P19474 475 aaKnown RBP21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 HOXD9P28356 352 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 HNF1BP35680 557 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 PPP1R26Q5T8A7 1209 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 CHST9Q7L1S5 443 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 IQUBQ8NA54 791 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 TAF4BQ92750 862 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 SLC6A18Q96N87 628 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 ACE2Q9BYF1 805 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 MTG2Q9H4K7 406 aa21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 APOBEC3GQ9HC16 384 aaKnown RBP21.25■□□□□ 0.99
SQSTM1-215ENST00000514093 RRP8O43159 456 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 PAPSS1O43252 624 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 RFPL3O75679 317 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 LDOC1O95751 146 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 HLA-DRAP01903 254 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 PIK3CAP42336 1068 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 INCA1Q0VD86 236 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 ADIPOR2Q86V24 386 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 ZC3H3Q8IXZ2 948 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 EID2Q8N6I1 236 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 SGK2Q9HBY8 427 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 ABCB8Q9NUT2 735 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 DMAC2Q9NW81 257 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 STRIP2Q9ULQ0 834 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 PCDHGA1Q9Y5H4 931 aa21.24■□□□□ 0.99
SQSTM1-215ENST00000514093 VILLO15195 856 aa21.23■□□□□ 0.99
SQSTM1-215ENST00000514093 WNT1P04628 370 aa21.23■□□□□ 0.99
SQSTM1-215ENST00000514093 ITGAVP06756 1048 aa21.23■□□□□ 0.99
SQSTM1-215ENST00000514093 NASPP49321 788 aaPredicted RBP21.23■□□□□ 0.99
SQSTM1-215ENST00000514093 CUL4AQ13619 759 aa21.23■□□□□ 0.99
SQSTM1-215ENST00000514093 CUL4BQ13620 913 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms