RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 VPS41P49754 854 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 PSEN1P49768 467 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 SLC5A3P53794 718 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 SLC10A2Q12908 348 aaPredicted RBP8.66□□□□□ -1.02
RNF4-220ENST00000513578 MTA1Q13330 715 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 KCNJ11Q14654 390 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 PDK1Q15118 436 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 PRKD1Q15139 912 aaPredicted RBP8.66□□□□□ -1.02
RNF4-220ENST00000513578 TPSAB1Q15661 275 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 KRT71Q3SY84 523 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 TRIM60Q495X7 471 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 CTXN3Q4LDR2 81 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 ACBD5Q5T8D3 534 aaPredicted RBP8.66□□□□□ -1.02
RNF4-220ENST00000513578 BTBD8Q5XKL5 378 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 RFX8Q6ZV50 586 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 SCD5Q86SK9 330 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 PRUNE1Q86TP1 453 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 TDRPQ86YL5 185 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 GPR65Q8IYL9 337 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 FAM71DQ8N9W8 422 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 MCUQ8NE86 351 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 OR2W6PQ8NHA6 318 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 DQX1Q8TE96 717 aaKnown RBP8.66□□□□□ -1.02
RNF4-220ENST00000513578 VWCEQ96DN2 955 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 SCLYQ96I15 445 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 HAPLN3Q96S86 360 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 FERMT1Q9BQL6 677 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 CCDC77Q9BR77 488 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 GPR62Q9BZJ7 368 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 WDCPQ9H6R7 721 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 DDIT4Q9NX09 232 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 CLIC5Q9NZA1 410 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.66□□□□□ -1.02
RNF4-220ENST00000513578 DTLQ9NZJ0 730 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 FNIP2Q9P278 1114 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 LGALS13Q9UHV8 139 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 NUP205Q92621 2012 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 PTPRSQ13332 1948 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 KIAA1671Q9BY89 1806 aa8.66□□□□□ -1.02
RNF4-220ENST00000513578 A0A087WUV0 522 aaPredicted RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 TBKBP1A7MCY6 615 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 E7EVH7 732 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 I6L893 689 aaPredicted RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 EEF2KO00418 725 aaKnown RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 RASGRF2O14827 1237 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 PPP1R12AO14974 1030 aaPredicted RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 KIAA0355O15063 1070 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 KCNN4O15554 427 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 SHBGP04278 402 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 IVLP07476 585 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 CLTBP09497 229 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 HAPLN1P10915 354 aaPredicted RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 NR1D1P20393 614 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 RBL1P28749 1068 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 GATMP50440 423 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 ATN1P54259 1190 aaPredicted RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 CCL23P55773 120 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 ARL4CP56559 192 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 RPL10AP62906 217 aaKnown RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 CDK16Q00536 496 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 GBE1Q04446 702 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 NME3Q13232 169 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 AUHQ13825 339 aaKnown RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 HIF1AQ16665 826 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 KYNUQ16719 465 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 KCTD19Q17RG1 926 aaPredicted RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 SLC8B1Q6J4K2 584 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 KCNT2Q6UVM3 1135 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 TAC4Q86UU9 113 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 ZC3H18Q86VM9 953 aaKnown RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 CCDC25Q86WR0 208 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 PYROXD2Q8N2H3 581 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 TFB1MQ8WVM0 346 aaKnown RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 HTR3CQ8WXA8 447 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 ZNF689Q96CS4 500 aaPredicted RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 LRRC39Q96DD0 335 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 C1orf74Q96LT6 269 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 EPAS1Q99814 870 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 TTPALQ9BTX7 342 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 KLC2Q9H0B6 622 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 CWH43Q9H720 699 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 OLA1Q9NTK5 396 aaKnown RBP8.65□□□□□ -1.02
RNF4-220ENST00000513578 EURLQ9NYK6 297 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 MTRRQ9UBK8 725 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 HEY1Q9Y5J3 304 aa8.65□□□□□ -1.02
RNF4-220ENST00000513578 MYO18AQ92614 2054 aaKnown RBP8.65□□□□□ -1.03
RNF4-220ENST00000513578 SHROOM3Q8TF72 1996 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 A0A0A0MRY4 1105 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 MTMR11A4FU01 709 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 WASH4PA8MWX3 477 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 KCNU1A8MYU2 1149 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 RGS16O15492 202 aaPredicted RBP8.64□□□□□ -1.03
RNF4-220ENST00000513578 MTSS1O43312 755 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SPAG6O75602 509 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 TMEM63AO94886 807 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 GSTA2P09210 222 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 OR4Q2P0C623 313 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ZDHHC11BP0C7U3 371 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 SLC2A3P11169 496 aa8.64□□□□□ -1.03
RNF4-220ENST00000513578 ERCC2P18074 760 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms