RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 STMN1P16949 149 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SLC26A2P50443 739 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CDK7P50613 346 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CDC42EP1Q00587 391 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 MPP2Q14168 576 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 TCEAL1Q15170 157 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 OASLQ15646 514 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ISLR2Q6UXK2 745 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ABHD15Q6UXT9 468 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 AMIGO3Q86WK7 504 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 BANPQ8N9N5 519 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 SH3TC2Q8TF17 1288 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CLEC4DQ8WXI8 215 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CLPTM1LQ96KA5 538 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NR1H4Q96RI1 486 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 P2RX7Q99572 595 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ZBTB18Q99592 522 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 TXLNGYQ9BZA5 131 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NKX1-2Q9UD57 310 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 TPST1O60507 370 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 PMPCBO75439 489 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ERBB2P04626 1255 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CD48P09326 243 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 TPH1P17752 444 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NOVP48745 357 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ABCE1P61221 599 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 OCA2Q04671 838 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NOMO1Q15155 1222 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 RNF220Q5VTB9 566 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 EFCAB3Q8N7B9 438 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 GSTCDQ8NEC7 633 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 OR6Y1Q8NGX8 325 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF516Q92618 1163 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NCLNQ969V3 563 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 MPP4Q96JB8 637 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CNDP1Q96KN2 507 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CPXM1Q96SM3 734 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 NTPCRQ9BSD7 190 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 CHST12Q9NRB3 414 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 PKD2L2Q9NZM6 624 aa8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 N4BP2Q86UW6 1770 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-216ENST00000512820 USP12O75317 370 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 MAFO75444 373 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 BPGMP07738 259 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 FAM58BPP0C7Q3 252 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 CETPP11597 493 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 INSRRP14616 1297 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 KLRC2P26717 231 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 PNPLA4P41247 253 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 GDF10P55107 478 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 PRKAA1Q13131 559 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ADRM1Q16186 407 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SPANXN3Q5MJ09 141 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ZDHHC17Q8IUH5 632 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 GLIS1Q8NBF1 620 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 CALML6Q8TD86 181 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 USP6NLQ92738 828 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 WNK4Q96J92 1243 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 UNKQ9C0B0 810 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ASCC2Q9H1I8 757 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 CYP4F12Q9HCS2 524 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 PACSIN3Q9UKS6 424 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 F8W8V4 182 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 PEX11AO75192 247 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 CFHP08603 1231 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ABCG1P45844 678 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 KIZQ2M2Z5 673 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SPDYAQ5MJ70 313 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 FASTKD5Q7L8L6 764 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 OPTNQ96CV9 577 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF570Q96NI8 536 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 LHX5Q9H2C1 402 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 RNPEPQ9H4A4 650 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 WDCPQ9H6R7 721 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 RHBDL2Q9NX52 303 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SNX5Q9Y5X3 404 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 A0A0A0MRY4 1105 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 HACD1B0YJ81 288 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 USP1O94782 785 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SP100P23497 879 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 NAB1Q13506 487 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 TTC33Q6PID6 262 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 UNC5AQ6ZN44 842 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SERAC1Q96JX3 654 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SPATA13Q96N96 652 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 TRIM62Q9BVG3 475 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 CCDC90BQ9GZT6 254 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 NMRAL1Q9HBL8 299 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SARS2Q9NP81 518 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 XPNPEP1Q9NQW7 623 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 NCKIPSDQ9NZQ3 722 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ANXA9O76027 345 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 TCF4P15884 667 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 PKNOX1P55347 436 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 JAG1P78504 1218 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 MRPS22P82650 360 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 CACNB2Q08289 660 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 DGKDQ16760 1214 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 MARK2Q7KZI7 788 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms