RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 NAPGQ99747 312 aaPredicted RBP7.48□□□□□ -1.21
NUP54-204ENST00000506098 SNRNP25Q9BV90 132 aaKnown RBP7.48□□□□□ -1.21
NUP54-204ENST00000506098 OSBPL2Q9H1P3 480 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 CARD9Q9H257 536 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 FAM204AQ9H8W3 233 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 MTMR10Q9NXD2 777 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 CLDND1Q9NY35 253 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 DNAI1Q9UI46 699 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 RASAL2Q9UJF2 1139 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 PACSIN2Q9UNF0 486 aaPredicted RBP7.48□□□□□ -1.21
NUP54-204ENST00000506098 USTQ9Y2C2 406 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.48□□□□□ -1.21
NUP54-204ENST00000506098 HYOU1Q9Y4L1 999 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 EYSQ5T1H1 3165 aa7.48□□□□□ -1.21
NUP54-204ENST00000506098 TRAV19A0A0A6YYK7 116 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 SLC12A8A0AV02 714 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 C3orf70A6NLC5 250 aaPredicted RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 ZNF487B1APH4 448 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 I6L893 689 aaPredicted RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 ENC1O14682 589 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 MSI1O43347 362 aaKnown RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 GREM1O60565 184 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 STC2O76061 302 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 LATS1O95835 1130 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 RARAP10276 462 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 MBL2P11226 248 aaPredicted RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 GJA1P17302 382 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 CEBPBP17676 345 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 TCP1P17987 556 aaKnown RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 FSHRP23945 695 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 KDELR1P24390 212 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 L1CAMP32004 1257 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 PTPN7P35236 360 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 MTHFRP42898 656 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 MARCKSL1P49006 195 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ZNF135P52742 658 aaPredicted RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 RWDD2BP57060 319 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 COPS2P61201 443 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ZXDBP98169 803 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 SATB1Q01826 763 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 SEMA3BQ13214 749 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 PDK2Q15119 407 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ZKSCAN8Q15776 578 aaPredicted RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 DPYSL2Q16555 572 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 TAZQ16635 292 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ARL13BQ3SXY8 428 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ATP13A4Q4VNC1 1196 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ZC3H12AQ5D1E8 599 aaKnown RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 ATAT1Q5SQI0 421 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ARTNQ5T4W7 220 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 STXBP5Q5T5C0 1151 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 DCAF12L1Q5VU92 463 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 NUGGCQ68CJ6 796 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 SCYL2Q6P3W7 929 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 Q7L0L9 218 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 FAM131BQ86XD5 332 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 DDX42Q86XP3 938 aaKnown RBP eCLIP7.47□□□□□ -1.21
NUP54-204ENST00000506098 RCOR2Q8IZ40 523 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 CCDC185Q8N715 623 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ATP6V0D2Q8N8Y2 350 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 EXD1Q8NHP7 514 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 KIF18AQ8NI77 898 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ITFG1Q8TB96 612 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 MYLIPQ8WY64 445 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 SUSD6Q92537 303 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ALG3Q92685 438 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 KRT35Q92764 455 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 PBKQ96KB5 322 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 BTN2A3PQ96KV6 586 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 C1orf74Q96LT6 269 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 RIPOR3Q96MK2 946 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 DCLK3Q9C098 648 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 TKTL2Q9H0I9 626 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 TRPV4Q9HBA0 871 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ANLNQ9NQW6 1124 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 GDE1Q9NZC3 331 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 PCSK1NQ9UHG2 260 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 STOML2Q9UJZ1 356 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 SNX12Q9UMY4 172 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 ARHGAP26Q9UNA1 814 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 AP4E1Q9UPM8 1137 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 EFR3BQ9Y2G0 817 aa7.47□□□□□ -1.21
NUP54-204ENST00000506098 MRPS23Q9Y3D9 190 aaKnown RBP7.47□□□□□ -1.21
NUP54-204ENST00000506098 SPTBN5Q9NRC6 3674 aaKnown RBP7.46□□□□□ -1.21
NUP54-204ENST00000506098 CKAP5Q14008 2032 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 SYNJ2BP-COX16A0A087WUM0 186 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 PAGE1O75459 146 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 ZRANB2O95218 330 aaKnown RBP eCLIP7.46□□□□□ -1.22
NUP54-204ENST00000506098 APOEP02649 317 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 HOXC13P31276 330 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 HTR7P34969 479 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 HCAR3P49019 387 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 KCNQ1P51787 676 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 MLLT6P55198 1093 aaPredicted RBP7.46□□□□□ -1.22
NUP54-204ENST00000506098 TUBB2AQ13885 445 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 PPP2R5EQ16537 467 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 CA9Q16790 459 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 C5orf22Q49AR2 442 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 EFHC2Q5JST6 749 aa7.46□□□□□ -1.22
NUP54-204ENST00000506098 KCNT1Q5JUK3 1230 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms