RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 DHX15O43143 795 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 RAD51Q06609 339 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 PTPN20Q4JDL3 420 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ZSWIM2Q8NEG5 633 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 TEKT4Q8WW24 435 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 WNT8BQ93098 351 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 FAM84AQ96KN4 292 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ZNF512Q96ME7 567 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 CCDC134Q9H6E4 229 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 GRHL1Q9NZI5 618 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 CPA4Q9UI42 421 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 PCDHB7Q9Y5E2 793 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 NHSL1Q5SYE7 1610 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 FANCGO15287 622 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 PRPF4O43172 522 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 SERPINB3P29508 390 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 PDCD2Q16342 344 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 EFHBQ8N7U6 833 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 NKD2Q969F2 451 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CINPQ9BW66 212 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 PLCH1Q4KWH8 1693 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CASTOR2A6NHX0 329 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 H7C4K7 107 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 RBP1P09455 135 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 SERPINB5P36952 375 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 MMRN1Q13201 1228 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 XRCC4Q13426 336 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CYLC2Q14093 348 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 LLGL2Q6P1M3 1020 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CRELD2Q6UXH1 353 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 JOSD2Q8TAC2 188 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 FAXDC2Q96IV6 333 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 TINF2Q9BSI4 451 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 COLEC11Q9BWP8 271 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 EFCAB1Q9HAE3 211 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 XPNPEP1Q9NQW7 623 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 PDP2Q9P2J9 529 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 AURKCQ9UQB9 309 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CNTNAP2Q9UHC6 1331 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 MAST2Q6P0Q8 1798 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CILPO75339 1184 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 HSPA1AP0DMV8 641 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 HSPA1BP0DMV9 641 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 YY1P25490 414 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 HMOX2P30519 316 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 PEX5P50542 639 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 ZBTB41Q5SVQ8 909 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 ELMSAN1Q6PJG2 1045 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 EME1Q96AY2 570 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 APOL2Q9BQE5 337 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CEP41Q9BYV8 373 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 DMAP1Q9NPF5 467 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 NCKIPSDQ9NZQ3 722 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 TRPV2Q9Y5S1 764 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC30A1Q9Y6M5 507 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 MYH1P12882 1939 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 ONECUT3O60422 494 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 E2F6O75461 281 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 BANF1O75531 89 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 DGKIO75912 1065 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 RHOBTB1O94844 696 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 NPR3P17342 541 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 PTPN1P18031 435 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CDKN2BP42772 138 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 CDC26Q8NHZ8 85 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 NAF1Q96HR8 494 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 PRKD2Q9BZL6 878 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 ING2Q9H160 280 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 BCAS3Q9H6U6 928 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 VTI1BQ9UEU0 232 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 LGALS13Q9UHV8 139 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 LSM7Q9UK45 103 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 SKIV2L2P42285 1042 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 MTA1Q13330 715 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 DCAF12L1Q5VU92 463 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 DRICH1Q6PGQ1 229 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 C18orf25Q96B23 403 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 L3MBTL3Q96JM7 780 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 RPRD1AQ96P16 312 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 ELOVL4Q9GZR5 314 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 LRRC4CQ9HCJ2 640 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 XPNPEP3Q9NQH7 507 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 RIC8BQ9NVN3 520 aa11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIMCH1-205ENST00000503057 LRP5O75197 1615 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 COL2A1P02458 1487 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 F5H5T6 163 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 CBX6O95503 412 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 CST3P01034 146 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PIGRP01833 764 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 GJB1P08034 283 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SMIM10L2AP0DMW4 78 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SMIM10L2BP0DMW5 78 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC11A2P49281 568 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 NOMO1Q15155 1222 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 LACTB2Q53H82 288 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 BNC2Q6ZN30 1099 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SOCS4Q8WXH5 440 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 EDEM1Q92611 657 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 FBXO32Q969P5 355 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms