RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 WDFY3Q8IZQ1 3526 aa12.78□□□□□ -0.36
UPF3A-210ENST00000493727 ARNTLO00327 626 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 MED7O43513 233 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 HCRTO43612 131 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 FAM157BP0CG42 384 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 VDRP11473 427 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 CYP11B1P15538 503 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 BRD2P25440 801 aaKnown RBP12.77□□□□□ -0.37
UPF3A-210ENST00000493727 LMO2P25791 158 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 HNRNPH3P31942 346 aaKnown RBP12.77□□□□□ -0.37
UPF3A-210ENST00000493727 PRKCIP41743 596 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 KPNA1P52294 538 aaPredicted RBP12.77□□□□□ -0.37
UPF3A-210ENST00000493727 LPAL2Q16609 132 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 ST3GAL2Q16842 350 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 SLC39A12Q504Y0 691 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 SGO2Q562F6 1265 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 GAREM2Q75VX8 874 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 RALGPS2Q86X27 583 aaPredicted RBP12.77□□□□□ -0.37
UPF3A-210ENST00000493727 TMTC1Q8IUR5 882 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 LRRC8AQ8IWT6 810 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 CELF5Q8N6W0 485 aaKnown RBP12.77□□□□□ -0.37
UPF3A-210ENST00000493727 SLC4A11Q8NBS3 891 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 B3GALNT2Q8NCR0 500 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 WHAMMQ8TF30 809 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 TMEM209Q96SK2 561 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 SEPT5Q99719 369 aaPredicted RBP12.77□□□□□ -0.37
UPF3A-210ENST00000493727 DPEP3Q9H4B8 488 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 HAUS4Q9H6D7 363 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 TASP1Q9H6P5 420 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 LMAN1LQ9HAT1 526 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 ACP6Q9NPH0 428 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 THG1LQ9NWX6 298 aaKnown RBP12.77□□□□□ -0.37
UPF3A-210ENST00000493727 RAB23Q9ULC3 237 aa12.77□□□□□ -0.37
UPF3A-210ENST00000493727 GABRDO14764 452 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 EFSO43281 561 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 PAPSS2O95340 614 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-210ENST00000493727 CALCAP01258 141 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 RETP07949 1114 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 HAPLN1P10915 354 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-210ENST00000493727 CHRNB1P11230 501 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 TNFAIP3P21580 790 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 DDX6P26196 483 aaKnown RBP eCLIP12.76□□□□□ -0.37
UPF3A-210ENST00000493727 EIF4A3P38919 411 aaKnown RBP12.76□□□□□ -0.37
UPF3A-210ENST00000493727 SATB1Q01826 763 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 NFE2Q16621 373 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-210ENST00000493727 MEA1Q16626 185 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 MDH1BQ5I0G3 518 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 PPM1JQ5JR12 505 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 DGKKQ5KSL6 1271 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 IRF2BP2Q7Z5L9 587 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 NOP9Q86U38 636 aaKnown RBP12.76□□□□□ -0.37
UPF3A-210ENST00000493727 ZNF677Q86XU0 584 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 SPEM1Q8N4L4 309 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 TTC9BQ8N6N2 239 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 BPIFB1Q8TDL5 484 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 SLC20A1Q8WUM9 679 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 CCDC42Q96M95 316 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 ACBD6Q9BR61 282 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 MED10Q9BTT4 135 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 NHEJ1Q9H9Q4 299 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-210ENST00000493727 NEUROD4Q9HD90 331 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 FAM49BQ9NUQ9 324 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 KIAA1257Q9ULG3 409 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 CEP83Q9Y592 693 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 PCDHB5Q9Y5E4 795 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 ATP8B3O60423 1300 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 ATRXP46100 2492 aa12.76□□□□□ -0.37
UPF3A-210ENST00000493727 BAHCC1Q9P281 2608 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 MYBPHLA2RUH7 354 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 SOWAHDA6NJG2 315 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ZZEF1O43149 2961 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 AKR1B10O60218 316 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ATP2C2O75185 946 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 SOAT2O75908 522 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 IPO7O95373 1038 aaKnown RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 MMEP08473 750 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 PLEKP08567 350 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 CCDC130P13994 396 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 PTPN1P18031 435 aaKnown RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ATF6P18850 670 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ADORA2BP29275 332 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 DEKP35659 375 aaKnown RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 CYLC1P35663 651 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 CXCL12P48061 93 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 CDK17Q00537 523 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 CDR2Q01850 454 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 CYP27A1Q02318 531 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 STILQ15468 1287 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 GOLGA7BQ2TAP0 167 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 HGSNATQ68CP4 663 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 WDR59Q6PJI9 974 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 PRR23CQ6ZRP0 262 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ZNF571Q7Z3V5 609 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 SYNPOQ8N3V7 929 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 C12orf29Q8N999 325 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ZNF830Q96NB3 372 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 CHP1Q99653 195 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 AGPAT1Q99943 283 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 LPIN3Q9BQK8 851 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 SEMA4GQ9NTN9 838 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms