RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PDHA1P08559 390 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 UBA7P41226 1012 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 STK4Q13043 487 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 MTAPQ13126 283 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 THOC5Q13769 683 aaKnown RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 TMEM266Q2M3C6 531 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 RUNDC3AQ59EK9 446 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 GRHL2Q6ISB3 625 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 PLEKHH3Q7Z736 793 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF761Q86XN6 746 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 MDGA1Q8NFP4 955 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 CLEC4CQ8WTT0 213 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 SCFD2Q8WU76 684 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 TMEM125Q96AQ2 219 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 SH3KBP1Q96B97 665 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 LMF1Q96S06 567 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 CD180Q99467 661 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 PLA2G12BQ9BX93 195 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 MUC13Q9H3R2 512 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 NRDE2Q9H7Z3 1164 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 SEMA4BQ9NPR2 832 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 PPP1R14DQ9NXH3 145 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF711Q9Y462 761 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 PRAMEF33A0A0G2JMD5 474 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 TMEM232C9JQI7 657 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF185O15231 689 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 PPM1DO15297 605 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 PRAMEF10O60809 474 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 INHBBP09529 407 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 TNNT1P13805 278 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 GLDCP23378 1020 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 OAS2P29728 719 aaKnown RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 GCH1P30793 250 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 CXCR5P32302 372 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 CTNNA1P35221 906 aaKnown RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 PPARGP37231 505 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 GOLGA8FQ08AF8 430 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 DUSP28Q4G0W2 176 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 AASDHQ4L235 1098 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 UBAP2Q5T6F2 1119 aaKnown RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 METRNLQ641Q3 311 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 FAM90A2PQ658T7 463 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 GPR139Q6DWJ6 353 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 RPUSD3Q6P087 351 aaKnown RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 MICALCLQ6ZW33 695 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 ADGRG5Q8IZF4 528 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 RFWD2Q8NHY2 731 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 SSH3Q8TE77 659 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 OVCA2Q8WZ82 227 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 RNFT2Q96EX2 444 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 OR14A2Q96R54 314 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 NR1H4Q96RI1 486 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 EYA3Q99504 573 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 TPSD1Q9BZJ3 242 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 CTDSP1Q9GZU7 261 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 SPATA31A3Q5VYP0 1347 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 KDM3AQ9Y4C1 1321 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 GXYLT2A0PJZ3 443 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FAM90A7PA6NKC0 464 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 ZAR1LA6NP61 321 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FAM90A22PA8MWA6 464 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FAM90A12PA8MX19 464 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FAM90A23PA8MXZ1 464 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FFAR3O14843 346 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 PGM3O95394 542 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 HSPA4LO95757 839 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 ICAM3P32942 547 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 NNMTP40261 264 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 GPD2P43304 727 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 RPS7P62081 194 aaKnown RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 OCA2Q04671 838 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 PRPF4BQ13523 1007 aaKnown RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 HLXQ14774 488 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 C16orf89Q6UX73 402 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 SNX32Q86XE0 403 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 GALNT13Q8IUC8 556 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FRMD1Q8N878 549 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 KCTD6Q8NC69 237 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FBXO15Q8NCQ5 510 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 KCNJ9Q92806 393 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FAM136AQ96C01 138 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 PIP5K1AQ99755 562 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 LBHD1Q9BQE6 289 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 HTATIP2Q9BUP3 242 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 SYNPO2LQ9H987 977 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 KCND2Q9NZV8 630 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 RNF181Q9P0P0 153 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 PCDHB2Q9Y5E7 798 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 GRM8O00222 908 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 ETV2O00321 342 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 NKX2-8O15522 239 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 CA12O43570 354 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 B4GALT3O60512 393 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 HNRNPCL1O60812 293 aaKnown RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 RARGP13631 454 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 IL11P20809 199 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 APOBEC3AP31941 199 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 EIF2DP41214 584 aaKnown RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 CPA2P48052 419 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 UFM1P61960 85 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms