RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 F9P00740 461 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 IGLV3-25P01717 112 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 APOEP02649 317 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 AVPR2P30518 371 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 CORO1AP31146 461 aaKnown RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 KPNA1P52294 538 aaPredicted RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 HDAC4P56524 1084 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 IFI16Q16666 785 aaKnown RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 TANGO2Q6ICL3 276 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 CC2D1AQ6P1N0 951 aaPredicted RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 PARM1Q6UWI2 310 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 STRADAQ7RTN6 431 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 DAAM2Q86T65 1068 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 DENND1CQ8IV53 801 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 REXO1L1PQ8IX06 675 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 CCAR2Q8N163 923 aaKnown RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 CELF5Q8N6W0 485 aaKnown RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 CENPIQ92674 756 aaPredicted RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 PLD4Q96BZ4 506 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 FCRL2Q96LA5 508 aaPredicted RBP17.86■□□□□ 0.45
LIME1-208ENST00000493265 WDCPQ9H6R7 721 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 ZWILCHQ9H900 591 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 ZFP14Q9HCL3 533 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 TMPRSS4Q9NRS4 437 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 NR2E1Q9Y466 385 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 MYO10Q9HD67 2058 aa17.86■□□□□ 0.45
LIME1-208ENST00000493265 HEPACAM2A8MVW5 462 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 SPOPO43791 374 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 LRCH4O75427 683 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 PALMO75781 387 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 TCF4P15884 667 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 CCR1P32246 355 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 HELZP42694 1942 aaKnown RBP17.85■□□□□ 0.45
LIME1-208ENST00000493265 HARS2P49590 506 aaKnown RBP17.85■□□□□ 0.45
LIME1-208ENST00000493265 CXCR3P49682 368 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 HADHBP55084 474 aaKnown RBP17.85■□□□□ 0.45
LIME1-208ENST00000493265 DDX42Q86XP3 938 aaKnown RBP eCLIP17.85■□□□□ 0.45
LIME1-208ENST00000493265 ARFGAP1Q8N6T3 406 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 RIN3Q8TB24 985 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 PGAP3Q96FM1 320 aaPredicted RBP17.85■□□□□ 0.45
LIME1-208ENST00000493265 TKTL2Q9H0I9 626 aa17.85■□□□□ 0.45
LIME1-208ENST00000493265 LSM7Q9UK45 103 aaKnown RBP17.85■□□□□ 0.45
LIME1-208ENST00000493265 ZFP37Q9Y6Q3 630 aaPredicted RBP17.85■□□□□ 0.45
LIME1-208ENST00000493265 NUP210Q8TEM1 1887 aaPredicted RBP17.84■□□□□ 0.45
LIME1-208ENST00000493265 GRID2IPA4D2P6 1211 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 PRPSAP2O60256 369 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 ENDOD1O94919 500 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 COMTP21964 271 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 FCARP24071 287 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 MIPP30301 263 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 NNTQ13423 1086 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 GRM2Q14416 872 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 ZNF77Q15935 545 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 HS1BP3Q53T59 392 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 NUGGCQ68CJ6 796 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 UNC45BQ8IWX7 931 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 CCDC185Q8N715 623 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 NIPA2Q8N8Q9 360 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 RSAD2Q8WXG1 361 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 ATOH1Q92858 354 aaPredicted RBP17.84■□□□□ 0.45
LIME1-208ENST00000493265 FGF14Q92915 247 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 SLC39A13Q96H72 371 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 LRRC3BQ96PB8 259 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 IRX2Q9BZI1 471 aaPredicted RBP17.84■□□□□ 0.45
LIME1-208ENST00000493265 PLA2G2FQ9BZM2 168 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 KIF9Q9HAQ2 790 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.84■□□□□ 0.45
LIME1-208ENST00000493265 GPATCH2LQ9NWQ4 482 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 EPS15L1Q9UBC2 864 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 LIMD1Q9UGP4 676 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 SLC12A6Q9UHW9 1150 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 XPO7Q9UIA9 1087 aaKnown RBP17.84■□□□□ 0.45
LIME1-208ENST00000493265 LCMT1Q9UIC8 334 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 ALG6Q9Y672 507 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 CAPN6Q9Y6Q1 641 aa17.84■□□□□ 0.45
LIME1-208ENST00000493265 CACNA1HO95180 2353 aa17.83■□□□□ 0.45
LIME1-208ENST00000493265 GFRA3O60609 400 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 IGLV3-27P01718 113 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 KLKB1P03952 638 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 SLC2A3P11169 496 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 WEE1P30291 646 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 GGCXP38435 758 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 RING1Q06587 406 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 USP4Q13107 963 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 EIF4EBP2Q13542 120 aaPredicted RBP17.83■□□□□ 0.44
LIME1-208ENST00000493265 PPP2R5DQ14738 602 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 ACAP1Q15027 740 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 ZFYVE27Q5T4F4 411 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 ZNF662Q6ZS27 426 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 MTSS1LQ765P7 747 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 BNIPLQ7Z465 357 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 YAF2Q8IY57 180 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 RNF10Q8N5U6 811 aaKnown RBP17.83■□□□□ 0.44
LIME1-208ENST00000493265 ATP6V0D2Q8N8Y2 350 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 KIAA1524Q8TCG1 905 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 BPIFB1Q8TDL5 484 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 PEBP4Q96S96 227 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 RPP25Q9BUL9 199 aaKnown RBP17.83■□□□□ 0.44
LIME1-208ENST00000493265 SIK2Q9H0K1 926 aa17.83■□□□□ 0.44
LIME1-208ENST00000493265 TRPV4Q9HBA0 871 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms