RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PRKD1Q15139 912 aaPredicted RBP21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 FAM171BQ6P995 826 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 MICALL1Q8N3F8 863 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 SLC44A1Q8WWI5 657 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 PAIP2Q9BPZ3 127 aaKnown RBP21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 ACBD6Q9BR61 282 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 PLAC1Q9HBJ0 212 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 INPP5FQ9Y2H2 1132 aa21.81■■□□□ 1.08
CCDC88B-208ENST00000492980 A0A0A0MRY4 1105 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 CCT8L1PA6NM43 557 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 CPP00450 1065 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 LTFP02788 710 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 AIF1P55008 147 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 TUSC3Q13454 348 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 ITGA7Q13683 1181 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 PAFAH1B3Q15102 231 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 ZKSCAN8Q15776 578 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 INTS6LQ5JSJ4 861 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 RFX8Q6ZV50 586 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 METTL23Q86XA0 190 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 SPATA13Q96N96 652 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 ANLNQ9NQW6 1124 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 ZC3H7BQ9UGR2 993 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 COL4A4P53420 1690 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 I6L893 689 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 M0QZQ0 153 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 EEF2KO00418 725 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 NCAM1P13591 858 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 SCAPQ12770 1279 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 SLC1A5Q15758 541 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 LACTB2Q53H82 288 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 ANKRD20A2Q5SQ80 823 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 ANKRD20A1Q5TYW2 823 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 ANKRD20A3Q5VUR7 823 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 NETO2Q8NC67 525 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 HASPINQ8TF76 798 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 LRRC39Q96DD0 335 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 PGAP3Q96FM1 320 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 PKMYT1Q99640 499 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 KDM4CQ9H3R0 1056 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 GRID1Q9ULK0 1009 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 NOD1Q9Y239 953 aa21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 USP15Q9Y4E8 981 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-208ENST00000492980 DCLK1O15075 740 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 ACTN3Q08043 901 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 SEMA3BQ13214 749 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 DENND5BQ6ZUT9 1274 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 PRPF39Q86UA1 669 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 TMLHEQ9NVH6 421 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 FAM72CH0Y354 149 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 AMHP03971 560 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 FAM72AQ5TYM5 149 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 FAM72DQ6L9T8 149 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 CGB2Q6NT52 195 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 ZNF598Q86UK7 904 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 FAM72BQ86X60 149 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 ECHDC2Q86YB7 292 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 RSPH1Q8WYR4 309 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 SIGLEC10Q96LC7 697 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 ACTR5Q9H9F9 607 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 FBXW11Q9UKB1 542 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 DSEQ9UL01 958 aa21.79■■□□□ 1.08
CCDC88B-208ENST00000492980 FRMPD3Q5JV73 1810 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 DNM1LO00429 736 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 SKIP12755 728 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 GLUD2P49448 558 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 PDK1Q15118 436 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 OR10T2Q8NGX3 314 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 P2RY11Q96G91 374 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 UROC1Q96N76 676 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 DDIT4Q9NX09 232 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 RRN3Q9NYV6 651 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 CAPN7Q9Y6W3 813 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 PTPRDP23468 1912 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 NLRC5Q86WI3 1866 aa21.78■■□□□ 1.08
CCDC88B-208ENST00000492980 IQANK1A0A1B0GTG1 560 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 RNF103O00237 685 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 ZWINTO95229 277 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 INHBAP08476 426 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 BDNFP23560 247 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 GBP2P32456 591 aaPredicted RBP21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 FDFT1P37268 417 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 SP3Q02447 781 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 AP1B1Q10567 949 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 MTFR1Q15390 333 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 RGS9BPQ6ZS82 235 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 SPATA21Q7Z572 469 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 BANPQ8N9N5 519 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 IRGQQ8WZA9 623 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 TMEM209Q96SK2 561 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 XAB2Q9HCS7 855 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 IKBKGQ9Y6K9 419 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 ITGB1P05556 798 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 GSTA2P09210 222 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 PAX3P23760 479 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 PRKCHP24723 683 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 GRIA1P42261 906 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 ACLYP53396 1101 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 FAAP100Q0VG06 881 aa21.77■■□□□ 1.08
CCDC88B-208ENST00000492980 PDK4Q16654 411 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms