RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 GRAMD1AQ96CP6 724 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 ZDHHC12Q96GR4 267 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 THAP7Q9BT49 309 aaPredicted RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 ZBTB26Q9HCK0 441 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 RIMKLBQ9ULI2 386 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 SLC27A6Q9Y2P4 619 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 ZNF804BA4D1E1 1349 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 ANO9A1A5B4 782 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 WDR91A4D1P6 747 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 CLCA1A8K7I4 914 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 TTC34A8MYJ7 566 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 KCNU1A8MYU2 1149 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 TISP43B9A030 160 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 APAF1O14727 1248 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 SPRY2O43597 315 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 USP12O75317 370 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 WDR47O94967 919 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 CYP2A6P11509 494 aaPredicted RBP2.53□□□□□ -2
HMGB1-208ENST00000490788 FGFR2P21802 821 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 ARHGAP25P42331 645 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 GSTM5P46439 218 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 CASP5P51878 434 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 PSG6Q00889 435 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 GHRHRQ02643 423 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 CFHR3Q02985 330 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 BFSP2Q13515 415 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 MFSD13AQ14CX5 517 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 LARS2Q15031 903 aaKnown RBP2.53□□□□□ -2
HMGB1-208ENST00000490788 CEP78Q5JTW2 689 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 COLEC12Q5KU26 742 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 PXDC1Q5TGL8 231 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 ZNF626Q68DY1 528 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 ANO7Q6IWH7 933 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 MRNIPQ6NTE8 343 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 CRTC1Q6UUV9 634 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 USP49Q70CQ1 688 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 KRT28Q7Z3Y7 464 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 BCDIN3DQ7Z5W3 292 aaKnown RBP2.53□□□□□ -2
HMGB1-208ENST00000490788 NEK8Q86SG6 692 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 SKAP1Q86WV1 359 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 KRT73Q86Y46 540 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 C12orf76Q8N812 135 aaPredicted RBP2.53□□□□□ -2
HMGB1-208ENST00000490788 OSR1Q8TAX0 266 aaPredicted RBP2.53□□□□□ -2
HMGB1-208ENST00000490788 ZNF566Q969W8 418 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 RITA1Q96K30 269 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 ZC3H10Q96K80 434 aaKnown RBP2.53□□□□□ -2
HMGB1-208ENST00000490788 FAM227BQ96M60 508 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 CCDC138Q96M89 665 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 SH2D3AQ9BRG2 576 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 EFHD1Q9BUP0 239 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 ADGRE3Q9BY15 652 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.53□□□□□ -2
HMGB1-208ENST00000490788 ARL8BQ9NVJ2 186 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 CAPN11Q9UMQ6 739 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.53□□□□□ -2
HMGB1-208ENST00000490788 TET3O43151 1660 aa2.53□□□□□ -2
HMGB1-208ENST00000490788 TULP4Q9NRJ4 1543 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 NCOA3Q9Y6Q9 1424 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 KIDINS220Q9ULH0 1771 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 MYO5CQ9NQX4 1742 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 DNAJC9-AS1A6NH13 148 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 AGPSO00116 658 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 CLIC1O00299 241 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 PODXLO00592 558 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 CA12O43570 354 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 VIPP01282 170 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 NHLRC4P0CG21 123 aaPredicted RBP2.52□□□□□ -2.01
HMGB1-208ENST00000490788 SRGAP2BP0DMP2 458 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 APEHP13798 732 aaKnown RBP2.52□□□□□ -2.01
HMGB1-208ENST00000490788 TSHRP16473 764 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 DRD1P21728 446 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 TNFSF4P23510 183 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 TACR3P29371 465 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF81P51508 661 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 JAK3P52333 1124 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 AK2P54819 239 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 HTRA4P83105 476 aaPredicted RBP2.52□□□□□ -2.01
HMGB1-208ENST00000490788 CBFBQ13951 182 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 SLC15A2Q16348 729 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.52□□□□□ -2.01
HMGB1-208ENST00000490788 FAM209BQ5JX69 171 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 MORN5Q5VZ52 161 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 CCSAPQ6IQ19 270 aaPredicted RBP2.52□□□□□ -2.01
HMGB1-208ENST00000490788 RANBP10Q6VN20 620 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF813Q6ZN06 617 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF66Q6ZN08 573 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 GALNT16Q8N428 558 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 METTL25Q8N6Q8 603 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 C8orf58Q8NAV2 365 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 PARD3BQ8TEW8 1205 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 RPL36ALQ969Q0 106 aaKnown RBP2.52□□□□□ -2.01
HMGB1-208ENST00000490788 CTHRC1Q96CG8 243 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 WDYHV1Q96HA8 205 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 HIC2Q96JB3 615 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 RIPOR3Q96MK2 946 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 NAP1L5Q96NT1 182 aaPredicted RBP2.52□□□□□ -2.01
HMGB1-208ENST00000490788 MYD88Q99836 296 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 COLEC11Q9BWP8 271 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 QTRT1Q9BXR0 403 aaKnown RBP2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms