RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 PDE4CQ08493 712 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 ADIGQ0VDE8 80 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 BST2Q10589 180 aaKnown RBP19.26■□□□□ 0.67
HDAC6-231ENST00000488905 GRIK2Q13002 908 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 CUL2Q13617 745 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 TRIP4Q15650 581 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-231ENST00000488905 SGO2Q562F6 1265 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 TMPRSS6Q8IU80 811 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 FMNL3Q8IVF7 1028 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 ZC3H3Q8IXZ2 948 aaKnown RBP19.26■□□□□ 0.67
HDAC6-231ENST00000488905 SIPA1Q96FS4 1042 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 TSG101Q99816 390 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 GPR174Q9BXC1 333 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 SLC2A11Q9BYW1 496 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 RMND1Q9NWS8 449 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 HESX1Q9UBX0 185 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 KLK13Q9UKR3 277 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 COQ4Q9Y3A0 265 aa19.26■□□□□ 0.67
HDAC6-231ENST00000488905 NYNRINQ9P2P1 1898 aaKnown RBP19.26■□□□□ 0.67
HDAC6-231ENST00000488905 CABIN1Q9Y6J0 2220 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 H0Y626 953 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 TRIM16O95361 564 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 HOXD9P28356 352 aaPredicted RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 TPMTP51580 245 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 COPAP53621 1224 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 YWHAEP62258 255 aaKnown RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 SLC14A1Q13336 389 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 HNRNPDQ14103 355 aaKnown RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 COBLL1Q53SF7 1204 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 TMEM215Q68D42 235 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 CACUL1Q86Y37 369 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 ZCCHC9Q8N567 271 aaKnown RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 SORCS1Q8WY21 1168 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 ZCCHC14Q8WYQ9 949 aaKnown RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 DNASE2BQ8WZ79 361 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 NDRG1Q92597 394 aaKnown RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 PRCCQ92733 491 aaPredicted RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 IPO9Q96P70 1041 aaKnown RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 LRRC4Q9HBW1 653 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 ITM2CQ9NQX7 267 aa19.25■□□□□ 0.67
HDAC6-231ENST00000488905 HBS1LQ9Y450 684 aaKnown RBP19.25■□□□□ 0.67
HDAC6-231ENST00000488905 A0A1B0GTW7 788 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 IGLV3-19P01714 112 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 EPHX1P07099 455 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 CD19P15391 556 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 OXTRP30559 389 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 HARS2P49590 506 aaKnown RBP19.24■□□□□ 0.67
HDAC6-231ENST00000488905 MPPE1Q53F39 396 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 ZNF658Q5TYW1 1059 aaPredicted RBP19.24■□□□□ 0.67
HDAC6-231ENST00000488905 SERPINA13PQ6UXR4 307 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 SIX6OS1Q8N1H7 587 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 CADM4Q8NFZ8 388 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 RNF139Q8WU17 664 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 ZDHHC5Q9C0B5 715 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 MSRB2Q9Y3D2 182 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 PTPRBP23467 1997 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 CACNA1GO43497 2377 aa19.24■□□□□ 0.67
HDAC6-231ENST00000488905 NBEAQ8NFP9 2946 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 CELSR3Q9NYQ7 3312 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 YJEFN3A6XGL0 299 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 E7ENQ6 273 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 O00370 1275 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 SETSIPP0DME0 302 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 ACADMP11310 421 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 RDXP35241 583 aaKnown RBP19.23■□□□□ 0.67
HDAC6-231ENST00000488905 PMS1P54277 932 aaKnown RBP19.23■□□□□ 0.67
HDAC6-231ENST00000488905 ZNF445P59923 1031 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 FKBP3Q00688 224 aaKnown RBP19.23■□□□□ 0.67
HDAC6-231ENST00000488905 ARID5AQ03989 594 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 ZNF423Q2M1K9 1284 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 DCAF12L1Q5VU92 463 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 NAXDQ8IW45 347 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 UBR7Q8N806 425 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 EDEM1Q92611 657 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 SLC35C1Q96A29 364 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 CAMK1GQ96NX5 476 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 SFMBT1Q9UHJ3 866 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 STOML2Q9UJZ1 356 aa19.23■□□□□ 0.67
HDAC6-231ENST00000488905 RALYQ9UKM9 306 aaKnown RBP19.23■□□□□ 0.67
HDAC6-231ENST00000488905 PLXNB3Q9ULL4 1909 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 MSI1O43347 362 aaKnown RBP19.22■□□□□ 0.67
HDAC6-231ENST00000488905 TIMM44O43615 452 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 SH3BP5O60239 455 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 TSPAN3O60637 253 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 LATS1O95835 1130 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 VDRP11473 427 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 TBXAS1P24557 533 aaPredicted RBP19.22■□□□□ 0.67
HDAC6-231ENST00000488905 HLA-FP30511 346 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 LRRC63Q05C16 580 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 BSPRYQ5W0U4 402 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 ANKRD40Q6AI12 368 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 FMR1NBQ8N0W7 255 aaPredicted RBP19.22■□□□□ 0.67
HDAC6-231ENST00000488905 UBA3Q8TBC4 463 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 WFIKKN2Q8TEU8 576 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 KCTD13Q8WZ19 329 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 GSDMAQ96QA5 445 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 MIR1-1HGQ9H1L0 117 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 CNGB3Q9NQW8 809 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 ABCC13Q9NSE7 274 aa19.22■□□□□ 0.67
HDAC6-231ENST00000488905 ARMCX3Q9UH62 379 aaPredicted RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms