RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SPEM1Q8N4L4 309 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 C3orf20Q8ND61 904 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 SLC30A5Q8TAD4 765 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 P2RY11Q96G91 374 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 VCPIP1Q96JH7 1222 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 XPO6Q96QU8 1125 aaKnown RBP16.52■□□□□ 0.24
UPF3A-208ENST00000484246 C11orf70Q9BRQ4 267 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 HAUS4Q9H6D7 363 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 FAM204AQ9H8W3 233 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.52■□□□□ 0.24
UPF3A-208ENST00000484246 DDIT4Q9NX09 232 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 ADAM22Q9P0K1 906 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 FBXO4Q9UKT5 387 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 LUC7L2Q9Y383 392 aaKnown RBP16.52■□□□□ 0.24
UPF3A-208ENST00000484246 TCRBV5S1A1TA0A578 114 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 KCNU1A8MYU2 1149 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 NEDD8-MDP1E9PL57 170 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 GRAP2O75791 330 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 KAT7O95251 611 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 APOEP02649 317 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 CYBBP04839 570 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 GZMAP12544 262 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 CCR1P32246 355 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 GBP1P32455 592 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 FLT3P36888 993 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 KLHL30Q0D2K2 578 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 MTAPQ13126 283 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 ANO4Q32M45 955 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 SLC25A52Q3SY17 297 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 ACAD10Q6JQN1 1059 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 Q6ZS52 159 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 MAML2Q8IZL2 1156 aaPredicted RBP16.51■□□□□ 0.23
UPF3A-208ENST00000484246 TERB1Q8NA31 727 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 ADAM32Q8TC27 787 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 KCNV2Q8TDN2 545 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 BTN2A3PQ96KV6 586 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 DDX50Q9BQ39 737 aaKnown RBP16.51■□□□□ 0.23
UPF3A-208ENST00000484246 SLC2A11Q9BYW1 496 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 ARHGEF4Q9NR80 690 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 RBM12Q9NTZ6 932 aaKnown RBP16.51■□□□□ 0.23
UPF3A-208ENST00000484246 DEC1Q9P2X7 70 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 SLC27A6Q9Y2P4 619 aa16.51■□□□□ 0.23
UPF3A-208ENST00000484246 DDX3XO00571 662 aaKnown RBP eCLIP16.5■□□□□ 0.233e-7■■■■□ 19.9
UPF3A-208ENST00000484246 F9P00740 461 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 APODP05090 189 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 SERPING1P05155 500 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 TNFAIP3P21580 790 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 TNFRSF4P43489 277 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 SLC6A11P48066 632 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 CCR3P51677 355 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 ANGPT1Q15389 498 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 ZNF528Q3MIS6 628 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 HSF5Q4G112 596 aaPredicted RBP16.5■□□□□ 0.23
UPF3A-208ENST00000484246 MPPE1Q53F39 396 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 C2CD6Q53TS8 623 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 BRMS1LQ5PSV4 323 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 NADSYN1Q6IA69 706 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 TRNP1Q6NT89 227 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 TPGS1Q6ZTW0 290 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 DRC7Q8IY82 874 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 ADAM33Q9BZ11 813 aa16.5■□□□□ 0.23
UPF3A-208ENST00000484246 METTL5Q9NRN9 209 aaKnown RBP16.5■□□□□ 0.23
UPF3A-208ENST00000484246 SEPT11Q9NVA2 429 aaKnown RBP16.5■□□□□ 0.23
UPF3A-208ENST00000484246 SPATA6Q9NWH7 488 aaPredicted RBP16.5■□□□□ 0.23
UPF3A-208ENST00000484246 C2CD4BA6NLJ0 364 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 GOLGA8SH3BPF8 625 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 K7EQS6 105 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 M0QYT0 321 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 ATG13O75143 517 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 RNF40O75150 1001 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 ENDOD1O94919 500 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 CISD3P0C7P0 127 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 TDGF1P13385 188 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 HOXD9P28356 352 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-208ENST00000484246 HOXA6P31267 233 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 PTPN9P43378 593 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 CXCR3P49682 368 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 MRPS21P82921 87 aaKnown RBP16.49■□□□□ 0.23
UPF3A-208ENST00000484246 MESP2Q0VG99 397 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 ZC3H12AQ5D1E8 599 aaKnown RBP16.49■□□□□ 0.23
UPF3A-208ENST00000484246 PPP1R15BQ5SWA1 713 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 PIK3R6Q5UE93 754 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 GRAMD4Q6IC98 578 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 MCOLN2Q8IZK6 566 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 ZNF557Q8N988 423 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-208ENST00000484246 USP33Q8TEY7 942 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 NELL1Q92832 810 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 PRICKLE1Q96MT3 831 aaPredicted RBP16.49■□□□□ 0.23
UPF3A-208ENST00000484246 DNAJC7Q99615 494 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 RBSNQ9H1K0 784 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 DNAJC17Q9NVM6 304 aaKnown RBP16.49■□□□□ 0.23
UPF3A-208ENST00000484246 CALCOCO1Q9P1Z2 691 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 STARD13Q9Y3M8 1113 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 PAXBP1Q9Y5B6 917 aa16.49■□□□□ 0.23
UPF3A-208ENST00000484246 SIGLEC16A6NMB1 481 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 LAMTOR5O43504 91 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 SLC6A4P31645 630 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 CASP14P31944 242 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 KIR2DL1P43626 348 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-208ENST00000484246 DGKGP49619 791 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms