RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TCF3P15923 654 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 IL1R2P27930 398 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 ADRA1BP35368 520 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 TAS2R40P59535 323 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 ARL13BQ3SXY8 428 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 ZNF569Q5MCW4 686 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 TANGO2Q6ICL3 276 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 HTR3DQ70Z44 454 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 PEX26Q7Z412 305 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 DENND1CQ8IV53 801 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 CCDC185Q8N715 623 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 TDRD5Q8NAT2 981 aaKnown RBP12.7□□□□□ -0.38
SDC1-206ENST00000482879 TRIM58Q8NG06 486 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 E2F7Q96AV8 911 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 RSPRY1Q96DX4 576 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 RPGRIP1Q96KN7 1286 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 BTN2A3PQ96KV6 586 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 PEBP4Q96S96 227 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 ZWILCHQ9H900 591 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 TMPRSS4Q9NRS4 437 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 OBP2AQ9NY56 170 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 THEGQ9P2T0 379 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 AMFRQ9UKV5 643 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 TCF20Q9UGU0 1960 aaKnown RBP12.7□□□□□ -0.38
SDC1-206ENST00000482879 E2F8A0AVK6 867 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 C2CD4DB7Z1M9 353 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 SCAMP3O14828 347 aaKnown RBP12.69□□□□□ -0.38
SDC1-206ENST00000482879 ACSL4O60488 711 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 PAGE1O75459 146 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 IL9P15248 144 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 FCARP24071 287 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 GJC1P36383 396 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 SLC11A2P49281 568 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 SLC25A11Q02978 314 aaKnown RBP12.69□□□□□ -0.38
SDC1-206ENST00000482879 USP4Q13107 963 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 MTA1Q13330 715 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 ZNF77Q15935 545 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 AAK1Q2M2I8 961 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 BOLA3Q53S33 107 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 EFHC2Q5JST6 749 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 ERMARDQ5T6L9 678 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 PARM1Q6UWI2 310 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 MTSS1LQ765P7 747 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 NT5DC3Q86UY8 548 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 RHOT1Q8IXI2 618 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 PLCD3Q8N3E9 789 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 RIN3Q8TB24 985 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 BPIFB1Q8TDL5 484 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 AZIN2Q96A70 460 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 NTAN1Q96AB6 310 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 LRRC3BQ96PB8 259 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 HAPLN3Q96S86 360 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 SNRNP25Q9BV90 132 aaKnown RBP12.69□□□□□ -0.38
SDC1-206ENST00000482879 SIK2Q9H0K1 926 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 ANLNQ9NQW6 1124 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 XPO7Q9UIA9 1087 aaKnown RBP12.69□□□□□ -0.38
SDC1-206ENST00000482879 AGO1Q9UL18 857 aaKnown RBP12.69□□□□□ -0.38
SDC1-206ENST00000482879 FZD10Q9ULW2 581 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 ZNF510Q9Y2H8 683 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 C5orf42Q9H799 3197 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 DOCK4Q8N1I0 1966 aa12.69□□□□□ -0.38
SDC1-206ENST00000482879 I6L893 689 aaPredicted RBP12.68□□□□□ -0.38
SDC1-206ENST00000482879 GREM1O60565 184 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 LATS1O95835 1130 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 KRT7P08729 469 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 RARAP10276 462 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 MSNP26038 577 aaKnown RBP12.68□□□□□ -0.38
SDC1-206ENST00000482879 AIF1P55008 147 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 SMTNL2Q2TAL5 461 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 ATP13A4Q4VNC1 1196 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 KCNT1Q5JUK3 1230 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 ZFYVE27Q5T4F4 411 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 LRRC38Q5VT99 294 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 TXNRD3NBQ6F5E7 133 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 Q6ZNB5 142 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 CYP4V2Q6ZWL3 525 aaPredicted RBP12.68□□□□□ -0.38
SDC1-206ENST00000482879 ZSCAN30Q86W11 494 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 BBS7Q8IWZ6 715 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 ZDHHC14Q8IZN3 488 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 SLC35F6Q8N357 371 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 TEKT4Q8WW24 435 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 HSPH1Q92598 858 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 FGF14Q92915 247 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 ELSPBP1Q96BH3 223 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 KXD1Q9BQD3 176 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 MAGEB5Q9BZ81 275 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 PLA2G2FQ9BZM2 168 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 DHX35Q9H5Z1 703 aaKnown RBP12.68□□□□□ -0.38
SDC1-206ENST00000482879 GPATCH2LQ9NWQ4 482 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 THG1LQ9NWX6 298 aaKnown RBP12.68□□□□□ -0.38
SDC1-206ENST00000482879 AP4E1Q9UPM8 1137 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 SNX10Q9Y5X0 201 aa12.68□□□□□ -0.38
SDC1-206ENST00000482879 NUP205Q92621 2012 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 PRUNE2Q8WUY3 3088 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 GOLGA6L7A0A1B0GV03 622 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 ANHXE9PGG2 379 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 SLC9A3R1O14745 358 aaPredicted RBP12.67□□□□□ -0.38
SDC1-206ENST00000482879 PSTPIP1O43586 416 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 ECI2O75521 394 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 CTNNA2P26232 953 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms