RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 RNF10Q8N5U6 811 aaKnown RBP6.99□□□□□ -1.29
USP48-208ENST00000479177 LRRC57Q8N9N7 239 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 C12orf50Q8NA57 414 aaPredicted RBP6.99□□□□□ -1.29
USP48-208ENST00000479177 C3orf20Q8ND61 904 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 ZMIZ2Q8NF64 920 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 SLC35G2Q8TBE7 412 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 ZNF564Q8TBZ8 553 aaPredicted RBP6.99□□□□□ -1.29
USP48-208ENST00000479177 SLC35F5Q8WV83 523 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 RIN2Q8WYP3 895 aaPredicted RBP6.99□□□□□ -1.29
USP48-208ENST00000479177 UTP4Q969X6 686 aaKnown RBP6.99□□□□□ -1.29
USP48-208ENST00000479177 MCRS1Q96EZ8 462 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 FUBP3Q96I24 572 aaKnown RBP eCLIP6.99□□□□□ -1.29
USP48-208ENST00000479177 HSFY1Q96LI6 401 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 ALS2CR12Q96Q35 445 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 WDR24Q96S15 920 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 SMOQ99835 787 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 GDF15Q99988 308 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 NUP85Q9BW27 656 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 DUSP16Q9BY84 665 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 CEP41Q9BYV8 373 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 RHOBTB2Q9BYZ6 727 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 MIS12Q9H081 205 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 ZBP1Q9H171 429 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 SYNCQ9H7C4 482 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 CSNK1G1Q9HCP0 422 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 CTTNBP2NLQ9P2B4 639 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 UVRAGQ9P2Y5 699 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 STK39Q9UEW8 545 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 CHORDC1Q9UHD1 332 aaPredicted RBP6.99□□□□□ -1.29
USP48-208ENST00000479177 STRIP2Q9ULQ0 834 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 COG5Q9UP83 839 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 PCDHB12Q9Y5F1 795 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 BACE2Q9Y5Z0 518 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 SCINQ9Y6U3 715 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 MYO9BQ13459 2157 aa6.99□□□□□ -1.29
USP48-208ENST00000479177 ATG2AQ2TAZ0 1938 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 MTMR11A4FU01 709 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 GRXCR1A8MXD5 290 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 HHLA1C9JL84 531 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 ADAM12O43184 909 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 PAPSS1O43252 624 aaPredicted RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 BUB1BO60566 1050 aaPredicted RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 PALMO75781 387 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 BEST1O76090 585 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 TIAF1O95411 115 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 GJB6O95452 261 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 VNN2O95498 520 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 URODP06132 367 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 TNNT1P13805 278 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 MYOGP15173 224 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 RPL17P18621 184 aaKnown RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 BDNFP23560 247 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 BMPR1AP36894 532 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 MAGEA11P43364 429 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 NOP2P46087 812 aaKnown RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 CDR1P51861 262 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 MAP3K7CLP57077 242 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 SLC8A3P57103 927 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 GNG11P61952 73 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 ROR1Q01973 937 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 GPR17Q13304 367 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 MAMLD1Q13495 774 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 ZNF268Q14587 947 aaPredicted RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 IFI16Q16666 785 aaKnown RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 EXOSC6Q5RKV6 272 aaKnown RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 ANKRD34AQ69YU3 496 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 C11orf63Q6NUN7 778 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 FAM183BPQ6ZVS7 135 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 GPRIN1Q7Z2K8 1008 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 SLFN11Q7Z7L1 901 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 PHLDB2Q86SQ0 1253 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 TMEM110Q86TL2 294 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 PIGZQ86VD9 579 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 SPATA2LQ8IUW3 424 aaPredicted RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 VPS52Q8N1B4 723 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 TRIM58Q8NG06 486 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 KCTD13Q8WZ19 329 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 C18orf8Q96DM3 657 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 WDR89Q96FK6 387 aaPredicted RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 PIWIL1Q96J94 861 aaKnown RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 FAM161BQ96MY7 647 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 KRTAP4-9Q9BYQ8 210 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 TRIM7Q9C029 511 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 C12orf49Q9H741 205 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 PNPLA8Q9NP80 782 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 DMAP1Q9NPF5 467 aaPredicted RBP6.98□□□□□ -1.29
USP48-208ENST00000479177 ST7Q9NRC1 585 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 WDR35Q9P2L0 1181 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 RWDD3Q9Y3V2 267 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 PCDHB5Q9Y5E4 795 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 PCDHA11Q9Y5I1 949 aa6.98□□□□□ -1.29
USP48-208ENST00000479177 GREB1Q4ZG55 1949 aa6.97□□□□□ -1.29
USP48-208ENST00000479177 ZNF638Q14966 1978 aaKnown RBP6.97□□□□□ -1.29
USP48-208ENST00000479177 WDR27A2RRH5 827 aa6.97□□□□□ -1.29
USP48-208ENST00000479177 C5orf67F2Z3F1 127 aa6.97□□□□□ -1.29
USP48-208ENST00000479177 F8VP50 259 aa6.97□□□□□ -1.29
USP48-208ENST00000479177 H0YGN5 161 aa6.97□□□□□ -1.29
USP48-208ENST00000479177 GOLGA8SH3BPF8 625 aa6.97□□□□□ -1.29
USP48-208ENST00000479177 SART1O43290 800 aaKnown RBP6.97□□□□□ -1.29
USP48-208ENST00000479177 PAGE1O75459 146 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms