RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 C8orf34Q49A92 452 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 KCNT1Q5JUK3 1230 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 LAYNQ6UX15 382 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 ZNF605Q86T29 641 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 DENND1CQ8IV53 801 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 LSM14AQ8ND56 463 aaKnown RBP18.01■□□□□ 0.47
VIM-204ENST00000478746 CLIC5Q9NZA1 410 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 PLA2G4CQ9UP65 541 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 PCDHGA1Q9Y5H4 931 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 RAI2Q9Y5P3 530 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 AK5Q9Y6K8 562 aa18.01■□□□□ 0.47
VIM-204ENST00000478746 KIF20AO95235 890 aa18■□□□□ 0.47
VIM-204ENST00000478746 RPN1P04843 607 aaKnown RBP18■□□□□ 0.47
VIM-204ENST00000478746 PDCP20941 246 aa18■□□□□ 0.47
VIM-204ENST00000478746 HNF1BP35680 557 aa18■□□□□ 0.47
VIM-204ENST00000478746 EFEMP1Q12805 493 aa18■□□□□ 0.47
VIM-204ENST00000478746 FNDC3BQ53EP0 1204 aaKnown RBP18■□□□□ 0.47
VIM-204ENST00000478746 CCDC186Q7Z3E2 898 aa18■□□□□ 0.47
VIM-204ENST00000478746 CPXM2Q8N436 756 aa18■□□□□ 0.47
VIM-204ENST00000478746 CUEDC2Q9H467 287 aa18■□□□□ 0.47
VIM-204ENST00000478746 TFIP11Q9UBB9 837 aaKnown RBP18■□□□□ 0.47
VIM-204ENST00000478746 MORC2Q9Y6X9 1032 aaPredicted RBP18■□□□□ 0.47
VIM-204ENST00000478746 ENC1O14682 589 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 PAPSS1O43252 624 aaPredicted RBP17.99■□□□□ 0.47
VIM-204ENST00000478746 TLX3O43711 291 aaPredicted RBP17.99■□□□□ 0.47
VIM-204ENST00000478746 LDOC1O95751 146 aaPredicted RBP17.99■□□□□ 0.47
VIM-204ENST00000478746 CDK4P11802 303 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 PLA2G2AP14555 144 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 BCAT1P54687 386 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 C21orf59P57076 290 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 E2F4Q16254 413 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 KNOP1Q1ED39 458 aaKnown RBP17.99■□□□□ 0.47
VIM-204ENST00000478746 CNNM4Q6P4Q7 775 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 TAF4BQ92750 862 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 DHX58Q96C10 678 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 USP28Q96RU2 1077 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 C7orf25Q9BPX7 421 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 TMEM245Q9H330 911 aa17.99■□□□□ 0.47
VIM-204ENST00000478746 A0A1B0GTQ1 180 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 CAPN9O14815 690 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 DNTTP04053 509 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 C1SP09871 688 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 CLDN6P56747 220 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 RPS14P62263 151 aaKnown RBP17.98■□□□□ 0.47
VIM-204ENST00000478746 ZBTB16Q05516 673 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 SPOPLQ6IQ16 392 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 UNC13DQ70J99 1090 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 GATAD2AQ86YP4 633 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 ZNF366Q8N895 744 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 CYB5D2Q8WUJ1 264 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 FCRL3Q96P31 734 aaPredicted RBP17.98■□□□□ 0.47
VIM-204ENST00000478746 ACE2Q9BYF1 805 aaPredicted RBP17.98■□□□□ 0.47
VIM-204ENST00000478746 FBRSQ9HAH7 460 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 SGK2Q9HBY8 427 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 SLC39A2Q9NP94 309 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 MARCH2Q9P0N8 246 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 STRIP2Q9ULQ0 834 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 USP3Q9Y6I4 520 aa17.98■□□□□ 0.47
VIM-204ENST00000478746 PTPRQQ9UMZ3 2332 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 SLC12A8A0AV02 714 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 VILLO15195 856 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 C7P10643 843 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 ASPAP45381 313 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 DLG4P78352 724 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 EHHADHQ08426 723 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 TARDBPQ13148 414 aaKnown RBP eCLIP17.97■□□□□ 0.47
VIM-204ENST00000478746 ZACNQ401N2 412 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 MPPE1Q53F39 396 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 PRAMEF14Q5SWL7 426 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 ZNF843Q8N446 348 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 IQUBQ8NA54 791 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 GOLGA5Q8TBA6 731 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 BAP1Q92560 729 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 CNDP2Q96KP4 475 aaKnown RBP17.97■□□□□ 0.47
VIM-204ENST00000478746 TWNKQ96RR1 684 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 NT5C1AQ9BXI3 368 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 DUSP16Q9BY84 665 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 NRSN2Q9GZP1 204 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 PRSS16Q9NQE7 514 aa17.97■□□□□ 0.47
VIM-204ENST00000478746 CBX4O00257 560 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 RFPL3O75679 317 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 ASS1P00966 412 aaKnown RBP17.96■□□□□ 0.47
VIM-204ENST00000478746 ITGAVP06756 1048 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 ABCB4P21439 1286 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 RACK1P63244 317 aaKnown RBP17.96■□□□□ 0.47
VIM-204ENST00000478746 DNAJC3Q13217 504 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 TTC31Q49AM3 519 aaPredicted RBP17.96■□□□□ 0.47
VIM-204ENST00000478746 SV2AQ7L0J3 742 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 CHST9Q7L1S5 443 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 RSRC2Q7L4I2 434 aaKnown RBP17.96■□□□□ 0.47
VIM-204ENST00000478746 ARHGAP18Q8N392 663 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 WFIKKN2Q8TEU8 576 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 SKA1Q96BD8 255 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 ELF4Q99607 663 aaPredicted RBP17.96■□□□□ 0.47
VIM-204ENST00000478746 ORAI3Q9BRQ5 295 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 NCKAP1Q9Y2A7 1128 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 CFAP46Q8IYW2 2715 aa17.96■□□□□ 0.47
VIM-204ENST00000478746 ZNF462Q96JM2 2506 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 HLA-FP30511 346 aa17.95■□□□□ 0.46
VIM-204ENST00000478746 PDE4CQ08493 712 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms