RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ZNF606Q8WXB4 792 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 FRYQ5TBA9 3013 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 PAPSS1O43252 624 aaPredicted RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 LETM1O95202 739 aaPredicted RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 FGFR1OPO95684 399 aaKnown RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 LATS1O95835 1130 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 PRKCHP24723 683 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 HARS2P49590 506 aaKnown RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 FUT11Q495W5 492 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 PPM1JQ5JR12 505 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 ADGRF1Q5T601 910 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 SYPL2Q5VXT5 272 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 RFWD3Q6PCD5 774 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 LPCAT2Q7L5N7 544 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 CYP2U1Q7Z449 544 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 KIAA0907Q7Z7F0 614 aaPredicted RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 DEFB119Q8N690 84 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 DQX1Q8TE96 717 aaKnown RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 SHC3Q92529 594 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 FCRL2Q96LA5 508 aaPredicted RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 PRICKLE1Q96MT3 831 aaPredicted RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 MKRN2Q9H000 416 aaKnown RBP14.7□□□□□ -0.06
UPF3A-204ENST00000475218 ELOVL2Q9NXB9 296 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 NAALADL1Q9UQQ1 740 aa14.7□□□□□ -0.06
UPF3A-204ENST00000475218 CDX4O14627 284 aaPredicted RBP14.69□□□□□ -0.06
UPF3A-204ENST00000475218 FBXO21O94952 628 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 PITX1P78337 314 aaPredicted RBP14.69□□□□□ -0.06
UPF3A-204ENST00000475218 IRX4P78413 519 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 ZNF234Q14588 700 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 MEA1Q16626 185 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 MPPE1Q53F39 396 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 MIIPQ5JXC2 388 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 PEAR1Q5VY43 1037 aaPredicted RBP14.69□□□□□ -0.06
UPF3A-204ENST00000475218 CLEC17AQ6ZS10 378 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 ANKS1BQ7Z6G8 1248 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 ADIPOR2Q86V24 386 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 SLC41A1Q8IVJ1 513 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 STK32AQ8WU08 396 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 PIGKQ92643 395 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 SLC39A13Q96H72 371 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 LMLNQ96KR4 655 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 SPACA7Q96KW9 195 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 EDEM2Q9BV94 578 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 SLC2A11Q9BYW1 496 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 APEX2Q9UBZ4 518 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 ATXN2Q99700 1313 aaKnown RBP14.69□□□□□ -0.06
UPF3A-204ENST00000475218 PCDH15Q96QU1 1955 aa14.69□□□□□ -0.06
UPF3A-204ENST00000475218 PI4KAP42356 2102 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 GTPBP10A4D1E9 387 aaKnown RBP14.68□□□□□ -0.06
UPF3A-204ENST00000475218 E5RJQ4 531 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 CYBBP04839 570 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 PNMA6AP0CW24 399 aaPredicted RBP14.68□□□□□ -0.06
UPF3A-204ENST00000475218 ITPKAP23677 461 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 RING1Q06587 406 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 TAF5Q15542 800 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 ARHGAP44Q17R89 818 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 PIK3R6Q5UE93 754 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 GBP6Q6ZN66 633 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 ENOSF1Q7L5Y1 443 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 TMEM110Q86TL2 294 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.68□□□□□ -0.06
UPF3A-204ENST00000475218 ADAM32Q8TC27 787 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 XPO7Q9UIA9 1087 aaKnown RBP14.68□□□□□ -0.06
UPF3A-204ENST00000475218 PILRBQ9UKJ0 227 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 THAP12O43422 761 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 IGLV3-25P01717 112 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 NCAM1P13591 858 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 GNA15P30679 374 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 COPAP53621 1224 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 TBX4P57082 545 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 EIF4EBP2Q13542 120 aaPredicted RBP14.68□□□□□ -0.06
UPF3A-204ENST00000475218 EXOC3L4Q17RC7 722 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 SPDYCQ5MJ68 293 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 SDE2Q6IQ49 451 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 TAC4Q86UU9 113 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 CREBRFQ8IUR6 639 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 TMA16Q96EY4 203 aaKnown RBP14.68□□□□□ -0.06
UPF3A-204ENST00000475218 LSM14BQ9BX40 385 aaKnown RBP14.68□□□□□ -0.06
UPF3A-204ENST00000475218 THAP9Q9H5L6 903 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 ST7Q9NRC1 585 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 LMBRD1Q9NUN5 540 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 CYP8B1Q9UNU6 501 aa14.68□□□□□ -0.06
UPF3A-204ENST00000475218 KCNJ18B7U540 433 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 MAP3K13O43283 966 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 ACSL4O60488 711 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 ADRB1P08588 477 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 RPL6Q02878 288 aaKnown RBP14.67□□□□□ -0.06
UPF3A-204ENST00000475218 PDCLQ13371 301 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 EIF4HQ15056 248 aaKnown RBP14.67□□□□□ -0.06
UPF3A-204ENST00000475218 PTPRNQ16849 979 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 HSP90AA4PQ58FG1 418 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 LYSMD4Q5XG99 296 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 BEND5Q7L4P6 421 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 AZIN2Q96A70 460 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 CIPCQ9C0C6 399 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 TMEM245Q9H330 911 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 FSCN3Q9NQT6 498 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 ABCB8Q9NUT2 735 aa14.67□□□□□ -0.06
UPF3A-204ENST00000475218 USP36Q9P275 1121 aaKnown RBP14.67□□□□□ -0.06
UPF3A-204ENST00000475218 EVLQ9UI08 416 aaPredicted RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms