RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 MAP3K6O95382 1288 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 EOMESO95936 686 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 F9P00740 461 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 POMCP01189 267 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 CKBP12277 381 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 HOXD10P28358 340 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 STX2P32856 288 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 MAGEA9P43362 315 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 CXCR3P49682 368 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 LRRC14Q15048 493 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 ANKRD20A2Q5SQ80 823 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 ANKRD20A1Q5TYW2 823 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 ANKRD20A3Q5VUR7 823 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 FAM43BQ6ZT52 329 aaPredicted RBP10.14□□□□□ -0.79
USP39-214ENST00000474572 RFX8Q6ZV50 586 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 CYS1Q717R9 158 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 RTN4RL1Q86UN2 441 aaPredicted RBP10.14□□□□□ -0.79
USP39-214ENST00000474572 ANKRD42Q8N9B4 389 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 CCDC197Q8NCU1 140 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 OR10T2Q8NGX3 314 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 SIGLEC10Q96LC7 697 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 TRIM62Q9BVG3 475 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 KCNK9Q9NPC2 374 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 ANLNQ9NQW6 1124 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 TMLHEQ9NVH6 421 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 NKIRAS1Q9NYS0 192 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 IGSF9Q9P2J2 1179 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 ZNF180Q9UJW8 692 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 TANC1Q9C0D5 1861 aa10.14□□□□□ -0.79
USP39-214ENST00000474572 VWA8A3KMH1 1905 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 A0A1W2PPM1 405 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 EEF2KO00418 725 aaKnown RBP10.13□□□□□ -0.79
USP39-214ENST00000474572 CAPN9O14815 690 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 PPP1R12AO14974 1030 aaPredicted RBP10.13□□□□□ -0.79
USP39-214ENST00000474572 AOC2O75106 756 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 KIAA0754O94854 1291 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 FSBPO95073 299 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 ZWINTO95229 277 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 GNRH1P01148 92 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 USP17L7P0C7H9 530 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 KRT15P19012 456 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 TAC1P20366 129 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 CYP2C18P33260 490 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 MSH2P43246 934 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 IFNAR2P48551 515 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 IL9RQ01113 521 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 PPARDQ03181 441 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 SLC18A2Q05940 514 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 WASHC5Q12768 1159 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 MBTPS1Q14703 1052 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 PDK1Q15118 436 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 FAXCQ5TGI0 409 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 STEAP4Q687X5 459 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 LHX8Q68G74 356 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 OVOS1Q6IE37 1185 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 CAPN12Q6ZSI9 719 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 SH2D5Q6ZV89 423 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 LRRTM3Q86VH5 581 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 KLHDC8BQ8IXV7 354 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 THEM5Q8N1Q8 247 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 TAB3Q8N5C8 712 aaPredicted RBP10.13□□□□□ -0.79
USP39-214ENST00000474572 SLC7A14Q8TBB6 771 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 DYDC1Q8WWB3 177 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 CCT6BQ92526 530 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 DPF3Q92784 378 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 CABS1Q96KC9 395 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 GLT1D1Q96MS3 346 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 SMC6Q96SB8 1091 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 BRD8Q9H0E9 1235 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 KIF9Q9HAQ2 790 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 XAB2Q9HCS7 855 aaKnown RBP10.13□□□□□ -0.79
USP39-214ENST00000474572 TMPRSS4Q9NRS4 437 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 SAMD15Q9P1V8 674 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 NEU3Q9UQ49 428 aa10.13□□□□□ -0.79
USP39-214ENST00000474572 IQANK1A0A1B0GTG1 560 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 FAM159BA6NKW6 160 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 TCP11X1B4DZS4 312 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 FAM72CH0Y354 149 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 I3L4J1 428 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 TNFRSF10BO14763 440 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 TM9SF1O15321 606 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 NCAM2O15394 837 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 IRAK2O43187 625 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 B4GALT3O60512 393 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 APOEP02649 317 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 AMHP03971 560 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 ITGB1P05556 798 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 APRTP07741 180 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 VIMP08670 466 aaKnown RBP10.12□□□□□ -0.79
USP39-214ENST00000474572 COL6A1P12109 1028 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 NCAM1P13591 858 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 ERCC2P18074 760 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 BDNFP23560 247 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 HOXC13P31276 330 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 FOXN2P32314 431 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 HTR7P34969 479 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 CCNFP41002 786 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 RABGGTBP53611 331 aa10.12□□□□□ -0.79
USP39-214ENST00000474572 PPIDQ08752 370 aaKnown RBP10.12□□□□□ -0.79
USP39-214ENST00000474572 IFT88Q13099 833 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms