RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CCDC134	Q9H6E4	229 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	SYNPO2L	Q9H987	977 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	RASSF1	Q9NS23	344 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	ABHD10	Q9NUJ1	306 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	ASIC5	Q9NY37	505 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	TLK1	Q9UKI8	766 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	ADAM21	Q9UKJ8	722 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	GJD2	Q9UKL4	321 aa		4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	LRRFIP2	Q9Y608	721 aa	Known RBP	4.36	□□□□□ -1.71
PTCD3-209	ENST00000472044	TCRBV5S1A1T	A0A578	114 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	MBD3L5	A6NJ08	208 aa	Predicted RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044		E7EVH7	732 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044		M0QYT0	321 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	C1R	P00736	705 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	HNRNPC	P07910	306 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	IGFBP2	P18065	325 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	THBS4	P35443	961 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	PAPOLA	P51003	745 aa	Known RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	JAK3	P52333	1124 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	FOXL2	P58012	376 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	RPL15	P61313	204 aa	Known RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	RAE1	P78406	368 aa	Known RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	COL10A1	Q03692	680 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	RPS6KA2	Q15349	733 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	FAM110C	Q1W6H9	321 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	ZNF362	Q5T0B9	420 aa	Predicted RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	TSTD2	Q5T7W7	516 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	ANKRD45	Q5TZF3	282 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	DGAT2L7P	Q6IED9	249 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	NAPRT	Q6XQN6	538 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	TRIM72	Q6ZMU5	477 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	RRAGA	Q7L523	313 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	RASGRP2	Q7LDG7	609 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	SLC2A12	Q8TD20	617 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	RILPL2	Q969X0	211 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	C3orf49	Q96BT1	292 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	SARAF	Q96BY9	339 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	DAZAP1	Q96EP5	407 aa	Known RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	TRMT61A	Q96FX7	289 aa	Known RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	TBATA	Q96M53	351 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	PYM1	Q9BRP8	204 aa	Known RBP	4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	USP29	Q9HBJ7	922 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	SEMA4G	Q9NTN9	838 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	PCDHB2	Q9Y5E7	798 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	DMRT1	Q9Y5R6	373 aa		4.35	□□□□□ -1.71
PTCD3-209	ENST00000472044	CYP3A7-CYP3A51P	A0A087WV96	503 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	C3orf70	A6NLC5	250 aa	Predicted RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	TARM1	B6A8C7	271 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	CLIC1	O00299	241 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	EIF3F	O00303	357 aa	Predicted RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	NCAM2	O15394	837 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	PROP1	O75360	226 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	SFPQ	P23246	707 aa	Known RBP eCLIP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	CYP3A7	P24462	503 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	COPB1	P53618	953 aa	Known RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	FAM3B	P58499	235 aa	Predicted RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	LARS2	Q15031	903 aa	Known RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	WDR93	Q6P2C0	686 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	LAS2	Q8IYD9	372 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	IL17RE	Q8NFR9	667 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	GPR150	Q8NGU9	434 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	MAFA	Q8NHW3	353 aa	Predicted RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	ADAMTS18	Q8TE60	1221 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	AFG1L	Q8WV93	481 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	HERVK_113	Q902F9	699 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	USP13	Q92995	863 aa	Predicted RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	EVI5L	Q96CN4	794 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	FYTTD1	Q96QD9	318 aa	Known RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	MACROD1	Q9BQ69	325 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	SCAND2P	Q9GZW5	306 aa	Predicted RBP	4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	PDP2	Q9P2J9	529 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	INSL6	Q9Y581	213 aa		4.34	□□□□□ -1.71
PTCD3-209	ENST00000472044	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	TTC34	A8MYJ7	566 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	POC1B-GALNT4	F8VUJ3	575 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	FYB1	O15117	783 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	EXOC3	O60645	756 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	CYP21A2	P08686	494 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	CKMT1A	P12532	417 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	GPD1	P21695	349 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	POU5F1B	Q06416	359 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	MFSD13A	Q14CX5	517 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	ALF	Q53S48	1182 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	ANKRD40	Q6AI12	368 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	KYAT3	Q6YP21	454 aa	Known RBP	4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	C2CD5	Q86YS7	1000 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	GALNT4	Q8N4A0	578 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	TMEM57	Q8N5G2	664 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	FAM98A	Q8NCA5	519 aa	Known RBP	4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	CSGALNACT1	Q8TDX6	532 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	P2RY11	Q96G91	374 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	HIC2	Q96JB3	615 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	CCDC17	Q96LX7	622 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	ELOVL1	Q9BW60	279 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	ADGRE3	Q9BY15	652 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	KLK15	Q9H2R5	256 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	CPNE5	Q9HCH3	593 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	IL17RB	Q9NRM6	502 aa		4.33	□□□□□ -1.72
PTCD3-209	ENST00000472044	RRN3	Q9NYV6	651 aa		4.33	□□□□□ -1.72

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