RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TBCBQ99426 244 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 C1QTNF1Q9BXJ1 281 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 MFSD1Q9H3U5 465 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 TBC1D17Q9HA65 648 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 GRPEL1Q9HAV7 217 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 C11orf16Q9NQ32 467 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 CALCOCO1Q9P1Z2 691 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 SLC12A6Q9UHW9 1150 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 MYO16Q9Y6X6 1858 aa12.42□□□□□ -0.42
VPS13D-204ENST00000469054 KANSL1LA0AUZ9 987 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 ANKRD62A6NC57 917 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 KCNU1A8MYU2 1149 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 STK25O00506 426 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 HOXC11O43248 304 aaPredicted RBP12.41□□□□□ -0.42
VPS13D-204ENST00000469054 ATMINO43313 823 aaPredicted RBP12.41□□□□□ -0.42
VPS13D-204ENST00000469054 ENDOD1O94919 500 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 MOCS2O96007 188 aaPredicted RBP12.41□□□□□ -0.42
VPS13D-204ENST00000469054 ADH5P11766 374 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 GPD1P21695 349 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 CD72P21854 359 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 RDXP35241 583 aaKnown RBP12.41□□□□□ -0.42
VPS13D-204ENST00000469054 PTPN9P43378 593 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 CXCR3P49682 368 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 ATP11AP98196 1134 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 MTA1Q13330 715 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 PPP2R5DQ14738 602 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 GAB4Q2WGN9 574 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 ANO4Q32M45 955 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 TXNDC11Q6PKC3 985 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 SND1Q7KZF4 910 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS13D-204ENST00000469054 FLCNQ8NFG4 579 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 CENPIQ92674 756 aaPredicted RBP12.41□□□□□ -0.42
VPS13D-204ENST00000469054 BTN2A3PQ96KV6 586 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 MCEEQ96PE7 176 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 NELL2Q99435 816 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 THAP2Q9H0W7 228 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 WDCPQ9H6R7 721 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 LTB4R2Q9NPC1 389 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 PIGVQ9NUD9 493 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 MARK1Q9P0L2 795 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 MYO1AQ9UBC5 1043 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 MRPS17Q9Y2R5 130 aaKnown RBP12.41□□□□□ -0.42
VPS13D-204ENST00000469054 SCINQ9Y6U3 715 aa12.41□□□□□ -0.42
VPS13D-204ENST00000469054 GOLGA6L7A0A1B0GV03 622 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 FAM86C2PA6NEL3 165 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 GOLGA6L6A8MZA4 724 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 TRDMT1O14717 391 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 FECHP22830 423 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 GALK1P51570 392 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 ZNF143P52747 638 aaPredicted RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 ATXN1P54253 815 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 GALCP54803 685 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 VCPP55072 806 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 CDO1Q16878 200 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 C15orf59Q2T9L4 293 aaPredicted RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 FAM133BQ5BKY9 247 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 TMEM31Q5JXX7 168 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 BRMS1LQ5PSV4 323 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 CWF19L1Q69YN2 538 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 NADSYN1Q6IA69 706 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 STRADAQ7RTN6 431 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 TMTC1Q8IUR5 882 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 ATP6V0D2Q8N8Y2 350 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 CD101Q93033 1021 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 EXOC4Q96A65 974 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 DDX50Q9BQ39 737 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 BBS2Q9BXC9 721 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 FOXQ1Q9C009 403 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 MRPL47Q9HD33 250 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 SPTLC3Q9NUV7 552 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 ARHGEF38Q9NXL2 777 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 XPO7Q9UIA9 1087 aaKnown RBP12.4□□□□□ -0.42
VPS13D-204ENST00000469054 PAXBP1Q9Y5B6 917 aa12.4□□□□□ -0.42
VPS13D-204ENST00000469054 TECTAO75443 2155 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 TMEM191CA6NGB0 347 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 FAM170BA6NMN3 283 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 PRR33A8MZF0 331 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 NEDD8-MDP1E9PL57 170 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 GFRA2O00451 464 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 PENKP01210 267 aaPredicted RBP12.39□□□□□ -0.43
VPS13D-204ENST00000469054 CYBBP04839 570 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 CYP1A2P05177 515 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 H2AFZP0C0S5 128 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 TYRP14679 529 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 TARSP26639 723 aaKnown RBP12.39□□□□□ -0.43
VPS13D-204ENST00000469054 SLC6A4P31645 630 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 OPRD1P41143 372 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 CLCN5P51795 746 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 OGDHQ02218 1023 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 UBXN2BQ14CS0 331 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 PON2Q15165 354 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 MPPE1Q53F39 396 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 SH3PXD2AQ5TCZ1 1133 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 PIK3R6Q5UE93 754 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 FYB2Q5VWT5 728 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 NAIF1Q69YI7 327 aaPredicted RBP12.39□□□□□ -0.43
VPS13D-204ENST00000469054 H2AFVQ71UI9 128 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 C12orf40Q86WS4 652 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 ETFBKMTQ8IXQ9 262 aa12.39□□□□□ -0.43
VPS13D-204ENST00000469054 CCDC170Q8IYT3 715 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms