RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 GPD1P21695 349 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 EIF2DP41214 584 aaKnown RBP20.56■□□□□ 0.88
COL9A3-204ENST00000463487 PTPN9P43378 593 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 SOX9P48436 509 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 GRSF1Q12849 480 aaKnown RBP eCLIP20.56■□□□□ 0.889e-7■□□□□ 11.2
COL9A3-204ENST00000463487 ZC3H12AQ5D1E8 599 aaKnown RBP20.56■□□□□ 0.88
COL9A3-204ENST00000463487 RHBDF2Q6PJF5 856 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 TPGS1Q6ZTW0 290 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 NUDT18Q6ZVK8 323 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 FAM217AQ8IXS0 508 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 FBXL6Q8N531 539 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 EMC1Q8N766 993 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 CFAP57Q96MR6 1250 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 TBCBQ99426 244 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 OSBPL6Q9BZF3 934 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 WDCPQ9H6R7 721 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 LUC7LQ9NQ29 371 aaKnown RBP20.56■□□□□ 0.88
COL9A3-204ENST00000463487 MARK1Q9P0L2 795 aa20.56■□□□□ 0.88
COL9A3-204ENST00000463487 TECTAO75443 2155 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 OTOL1A6NHN0 477 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 NEDD8-MDP1E9PL57 170 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 IPO7O95373 1038 aaKnown RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 RFC1P35251 1148 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 CLCN5P51795 746 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 PITX1P78337 314 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 GFPT1Q06210 699 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 MAMLD1Q13495 774 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 LRRC32Q14392 662 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 ARL13BQ3SXY8 428 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 MPPE1Q53F39 396 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 PLEKHA7Q6IQ23 1121 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 STRADAQ7RTN6 431 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 TMEM25Q86YD3 366 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 PJA1Q8NG27 643 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 CCDC26Q8TAB7 109 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 CTNNBL1Q8WYA6 563 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 ANP32BQ92688 251 aaKnown RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 CD101Q93033 1021 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 P2RY13Q9BPV8 354 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 GRPEL1Q9HAV7 217 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 LTB4R2Q9NPC1 389 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 NDRG2Q9UN36 371 aaKnown RBP20.55■□□□□ 0.88
COL9A3-204ENST00000463487 SIT1Q9Y3P8 196 aa20.55■□□□□ 0.88
COL9A3-204ENST00000463487 TCRBV5S1A1TA0A578 114 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 FAM86C2PA6NEL3 165 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 KCNU1A8MYU2 1149 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 MAGEA9P43362 315 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 CXCR3P49682 368 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 ZNF143P52747 638 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-204ENST00000463487 ATP11AP98196 1134 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 EIF4EBP2Q13542 120 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-204ENST00000463487 C10orf76Q5T2E6 689 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 CCDC117Q8IWD4 279 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-204ENST00000463487 CCDC170Q8IYT3 715 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 ZNF557Q8N988 423 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-204ENST00000463487 SPC24Q8NBT2 197 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 JOSD2Q8TAC2 188 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 DDI1Q8WTU0 396 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 CHP1Q99653 195 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 NCAPGQ9BPX3 1015 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 CNPY3Q9BT09 278 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 MYO1AQ9UBC5 1043 aa20.54■□□□□ 0.88
COL9A3-204ENST00000463487 MUC3AQ02505 3323 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 FAM170BA6NMN3 283 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 TRDMT1O14717 391 aaKnown RBP20.53■□□□□ 0.88
COL9A3-204ENST00000463487 ATMINO43313 823 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-204ENST00000463487 TYRP14679 529 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 DRD1P21728 446 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 CD72P21854 359 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 CYLC1P35663 651 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-204ENST00000463487 VCPP55072 806 aaKnown RBP20.53■□□□□ 0.88
COL9A3-204ENST00000463487 GSDMDP57764 484 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 PON2Q15165 354 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 CDO1Q16878 200 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 ASTE1Q2TB18 679 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-204ENST00000463487 CCDC14Q49A88 953 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 PPP1R15BQ5SWA1 713 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 IER5LQ5T953 404 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 ASTLQ6HA08 431 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-204ENST00000463487 CHSY1Q86X52 802 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 TMTC1Q8IUR5 882 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 TMA16Q96EY4 203 aaKnown RBP20.53■□□□□ 0.88
COL9A3-204ENST00000463487 THAP2Q9H0W7 228 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 PIGVQ9NUD9 493 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 DEC1Q9P2X7 70 aa20.53■□□□□ 0.88
COL9A3-204ENST00000463487 CUL9Q8IWT3 2517 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 F5H5T6 163 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 CACNG3O60359 315 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 GJB6O95452 261 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 H2AFZP0C0S5 128 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 AOC1P19801 751 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 SPA17Q15506 151 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 DGKKQ5KSL6 1271 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 MPP7Q5T2T1 576 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 TRNP1Q6NT89 227 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 H2AFVQ71UI9 128 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 FNIP1Q8TF40 1166 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 FAM172AQ8WUF8 416 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 PNKPQ96T60 521 aa20.52■□□□□ 0.88
COL9A3-204ENST00000463487 TKTL2Q9H0I9 626 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms