RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ZNF132P52740 706 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 PMS1P54277 932 aaKnown RBP16.83■□□□□ 0.28
COL7A1-204ENST00000462475 BST2Q10589 180 aaKnown RBP16.83■□□□□ 0.28
COL7A1-204ENST00000462475 SGO2Q562F6 1265 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 FREM2Q5SZK8 3169 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 ZCCHC9Q8N567 271 aaKnown RBP16.83■□□□□ 0.28
COL7A1-204ENST00000462475 EDEM1Q92611 657 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 SIPA1Q96FS4 1042 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 LRRC4Q9HBW1 653 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 ITM2CQ9NQX7 267 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 COQ4Q9Y3A0 265 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 ATP6V1DQ9Y5K8 247 aa16.83■□□□□ 0.28
COL7A1-204ENST00000462475 TMEM8BA6NDV4 472 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 YJEFN3A6XGL0 299 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 E7ENQ6 273 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 MSI1O43347 362 aaKnown RBP16.82■□□□□ 0.28
COL7A1-204ENST00000462475 SH3BP5O60239 455 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 EPHX1P07099 455 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 HLA-EP13747 358 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 LRMPQ12912 555 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 ANKRD40Q6AI12 368 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 SERPINA13PQ6UXR4 307 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 UBR7Q8N806 425 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 UBA3Q8TBC4 463 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 ZCCHC14Q8WYQ9 949 aaKnown RBP16.82■□□□□ 0.28
COL7A1-204ENST00000462475 DNASE2BQ8WZ79 361 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 PRCCQ92733 491 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-204ENST00000462475 IPO9Q96P70 1041 aaKnown RBP16.82■□□□□ 0.28
COL7A1-204ENST00000462475 SLC2A11Q9BYW1 496 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 OLA1Q9NTK5 396 aaKnown RBP16.82■□□□□ 0.28
COL7A1-204ENST00000462475 RMND1Q9NWS8 449 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 HESX1Q9UBX0 185 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 SFMBT1Q9UHJ3 866 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 PCNX2A6NKB5 2137 aa16.82■□□□□ 0.28
COL7A1-204ENST00000462475 DMXL2Q8TDJ6 3036 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 A0A1B0GTW7 788 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 TRIM49BA6NDI0 452 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 O00370 1275 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 IGLV3-19P01714 112 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 HLA-FP30511 346 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 HARS2P49590 506 aaKnown RBP16.81■□□□□ 0.28
COL7A1-204ENST00000462475 MPPE1Q53F39 396 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 ZNF658Q5TYW1 1059 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-204ENST00000462475 DCAF12L1Q5VU92 463 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 BSPRYQ5W0U4 402 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 FMR1NBQ8N0W7 255 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-204ENST00000462475 CHCHD4Q8N4Q1 142 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 CADM4Q8NFZ8 388 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 RNF139Q8WU17 664 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 ERCC4Q92889 916 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-204ENST00000462475 SLC35C1Q96A29 364 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 CCDC34Q96HJ3 373 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 TSG101Q99816 390 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 MIR1-1HGQ9H1L0 117 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 MSRB2Q9Y3D2 182 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 HBS1LQ9Y450 684 aaKnown RBP16.81■□□□□ 0.28
COL7A1-204ENST00000462475 ZFYVE26Q68DK2 2539 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 FAM208BQ5VWN6 2430 aa16.81■□□□□ 0.28
COL7A1-204ENST00000462475 PKD1L2Q7Z442 2459 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 SETSIPP0DME0 302 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 SGSHP51688 502 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 YWHAEP62258 255 aaKnown RBP16.8■□□□□ 0.28
COL7A1-204ENST00000462475 FKBP3Q00688 224 aaKnown RBP16.8■□□□□ 0.28
COL7A1-204ENST00000462475 SLC14A1Q13336 389 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 PKDCCQ504Y2 493 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 COBLL1Q53SF7 1204 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 FAM124AQ86V42 546 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 NAXDQ8IW45 347 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 SIX6OS1Q8N1H7 587 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 ZNF366Q8N895 744 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 CYB5D2Q8WUJ1 264 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 ARMCX3Q9UH62 379 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-204ENST00000462475 STOML2Q9UJZ1 356 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 NFE2L3Q9Y4A8 694 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 LAMA5O15230 3695 aa16.8■□□□□ 0.28
COL7A1-204ENST00000462475 CKAP5Q14008 2032 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 SRRM3A6NNA2 597 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 METTL12A8MUP2 240 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 H0Y626 953 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 TIMM44O43615 452 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 GABBR2O75899 941 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 TRIM16O95361 564 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 ACADMP11310 421 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 VDRP11473 427 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 LCP1P13796 627 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 OXTRP30559 389 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 RGS7P49802 495 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 DAOAP59103 153 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 BNC1Q01954 994 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 ARID5AQ03989 594 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 CAMK2GQ13555 558 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 HNRNPDQ14103 355 aaKnown RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 E2F5Q15329 346 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 TRIP6Q15654 476 aaKnown RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 ZNF423Q2M1K9 1284 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 FNDC3BQ53EP0 1204 aaKnown RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 CHST9Q7L1S5 443 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 RAB44Q7Z6P3 723 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-204ENST00000462475 OR2T3Q8NH03 318 aa16.79■□□□□ 0.28
COL7A1-204ENST00000462475 WFIKKN2Q8TEU8 576 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms