RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 CXCR3P49682 368 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 TNK2Q07912 1038 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 TCEAL1Q15170 157 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 NUGGCQ68CJ6 796 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 ZNF564Q8TBZ8 553 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-202ENST00000451053 FAM172AQ8WUF8 416 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 CENPIQ92674 756 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-202ENST00000451053 BTBD6Q96KE9 485 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 FAM83CQ9BQN1 747 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 CNPY3Q9BT09 278 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 DCLK3Q9C098 648 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 LACRTQ9GZZ8 138 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 BRD9Q9H8M2 597 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 OSGEPQ9NPF4 335 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 HPS4Q9NQG7 708 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 UVRAGQ9P2Y5 699 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 XPO7Q9UIA9 1087 aaKnown RBP13.54□□□□□ -0.24
VPS33A-202ENST00000451053 MUTYHQ9UIF7 546 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 ANAPC7Q9UJX3 599 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 GUCA1BQ9UMX6 200 aa13.54□□□□□ -0.24
VPS33A-202ENST00000451053 COL4A2P08572 1712 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 A0A0U1RQJ8 604 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 KCNU1A8MYU2 1149 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 F9P00740 461 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 APOEP02649 317 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 SRFP11831 508 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 RDXP35241 583 aaKnown RBP13.53□□□□□ -0.24
VPS33A-202ENST00000451053 HARS2P49590 506 aaKnown RBP13.53□□□□□ -0.24
VPS33A-202ENST00000451053 VCPP55072 806 aaKnown RBP13.53□□□□□ -0.24
VPS33A-202ENST00000451053 HDAC4P56524 1084 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 PPP2R5DQ14738 602 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 PDGFRLQ15198 375 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 EML3Q32P44 896 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 NADSYN1Q6IA69 706 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 SND1Q7KZF4 910 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS33A-202ENST00000451053 STRADAQ7RTN6 431 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 FAM131BQ86XD5 332 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 UNC45BQ8IWX7 931 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 C17orf53Q8N3J3 647 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-202ENST00000451053 ARFGAP1Q8N6T3 406 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 KIAA1958Q8N8K9 716 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 SLC35G2Q8TBE7 412 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 FNIP1Q8TF40 1166 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 ATRIPQ8WXE1 791 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 RNF34Q969K3 372 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 ALS2CR12Q96Q35 445 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 EBF3Q9H4W6 596 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 ANLNQ9NQW6 1124 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 TMPRSS4Q9NRS4 437 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 TBC1D14Q9P2M4 693 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 LCMT1Q9UIC8 334 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 DUSP12Q9UNI6 340 aa13.53□□□□□ -0.24
VPS33A-202ENST00000451053 MYO10Q9HD67 2058 aa13.52□□□□□ -0.24
VPS33A-202ENST00000451053 GOLGA6L7A0A1B0GV03 622 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 MACROD2A1Z1Q3 448 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 OTOL1A6NHN0 477 aaPredicted RBP13.52□□□□□ -0.25
VPS33A-202ENST00000451053 I6L893 689 aaPredicted RBP13.52□□□□□ -0.25
VPS33A-202ENST00000451053 SLC9A3R1O14745 358 aaPredicted RBP13.52□□□□□ -0.25
VPS33A-202ENST00000451053 ACSL4O60488 711 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 MTA2O94776 668 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 CYP17A1P05093 508 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 SLC2A3P11169 496 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 CCR1P32246 355 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 NOP2P46087 812 aaKnown RBP13.52□□□□□ -0.25
VPS33A-202ENST00000451053 HADHBP55084 474 aaKnown RBP13.52□□□□□ -0.25
VPS33A-202ENST00000451053 NAP1L1P55209 391 aaKnown RBP13.52□□□□□ -0.25
VPS33A-202ENST00000451053 DAB2IPQ5VWQ8 1189 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 TRIM58Q8NG06 486 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 TTC8Q8TAM2 541 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 IRF7Q92985 503 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 ATP2A3Q93084 1043 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 OTUB2Q96DC9 234 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 TKTL2Q9H0I9 626 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 SLC2A4RGQ9NR83 387 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS33A-202ENST00000451053 ARHGEF38Q9NXL2 777 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 GTSE1Q9NYZ3 720 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 STOML2Q9UJZ1 356 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 ZNF510Q9Y2H8 683 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 COL4A3Q01955 1670 aa13.52□□□□□ -0.25
VPS33A-202ENST00000451053 TICRRQ7Z2Z1 1910 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 TRDMT1O14717 391 aaKnown RBP13.51□□□□□ -0.25
VPS33A-202ENST00000451053 PAGE1O75459 146 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 NFATC1O95644 943 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 LATS1O95835 1130 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 SLC6A4P31645 630 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 SLC11A2P49281 568 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 RUNX3Q13761 415 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 FAM133BQ5BKY9 247 aaKnown RBP13.51□□□□□ -0.25
VPS33A-202ENST00000451053 BRMS1LQ5PSV4 323 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 IER5LQ5T953 404 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 PIK3R6Q5UE93 754 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 NYAP1Q6ZVC0 841 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 CPNE8Q86YQ8 564 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 FAM217AQ8IXS0 508 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 ADGRG2Q8IZP9 1017 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 SYCE1Q8N0S2 351 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 CCDC185Q8N715 623 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 ATP6V0D2Q8N8Y2 350 aa13.51□□□□□ -0.25
VPS33A-202ENST00000451053 UBE2Q2Q8WVN8 375 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms