RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 HSP90AA5PQ58FG0 334 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 SH2D4BQ5SQS7 431 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 TREML2Q5T2D2 321 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 CHSY1Q86X52 802 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 PYROXD2Q8N2H3 581 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 NIPA2Q8N8Q9 360 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ZNF483Q8TF39 744 aaPredicted RBP12.22□□□□□ -0.45
MSH6-204ENST00000445503 EXT2Q93063 718 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ECSITQ9BQ95 431 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ZNF358Q9NW07 568 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 STYXL1Q9Y6J8 313 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 M0QYT0 321 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ITM2AO43736 263 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 CILPO75339 1184 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 SERPINE1P05121 402 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 GSTA2P09210 222 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 PSMB4P28070 264 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ZNF132P52740 706 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 OAZ1P54368 228 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 USP10Q14694 798 aaKnown RBP12.22□□□□□ -0.45
MSH6-204ENST00000445503 KRT72Q14CN4 511 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 SPDYAQ5MJ70 313 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 CNBD2Q96M20 576 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 NIFKQ9BYG3 293 aaKnown RBP12.22□□□□□ -0.45
MSH6-204ENST00000445503 CYP3A43Q9HB55 503 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 SNTG2Q9NY99 539 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 EURLQ9NYK6 297 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ERAP1Q9NZ08 941 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 KANSL3Q9P2N6 904 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 PPM1HQ9ULR3 514 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ARHGAP26Q9UNA1 814 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 PLA2G4CQ9UP65 541 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 STRCQ7RTU9 1775 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ADAMTSL1Q8N6G6 1762 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 LIN7AO14910 233 aaPredicted RBP12.22□□□□□ -0.45
MSH6-204ENST00000445503 PGM3O95394 542 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 TGDSO95455 350 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 PKNOX1P55347 436 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 MAP1SQ66K74 1059 aaPredicted RBP12.22□□□□□ -0.45
MSH6-204ENST00000445503 LAYNQ6UX15 382 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 ACAD11Q709F0 780 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 NET1Q7Z628 596 aaPredicted RBP12.22□□□□□ -0.45
MSH6-204ENST00000445503 FNIP1Q8TF40 1166 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 MARK4Q96L34 752 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 DTNAQ9Y4J8 743 aa12.22□□□□□ -0.45
MSH6-204ENST00000445503 SLC15A5A6NIM6 579 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 HUS1O60921 280 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 TM7SF2O76062 418 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 SPRP35270 261 aaPredicted RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 GNL1P36915 607 aaPredicted RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 GPD2P43304 727 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 RANBP1P43487 201 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 HPS6Q86YV9 775 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 APOBEC3FQ8IUX4 373 aaKnown RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 CEP70Q8NHQ1 597 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 SLC7A14Q8TBB6 771 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 CAB39LQ9H9S4 337 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 ANLNQ9NQW6 1124 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 PDGFCQ9NRA1 345 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.21□□□□□ -0.452e-7■■■■□ 21.4
MSH6-204ENST00000445503 DCDC2Q9UHG0 476 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 RPL26L1Q9UNX3 145 aaKnown RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 C2CD4BA6NLJ0 364 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 FKBP6O75344 327 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 PIGRP01833 764 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 AKAP5P24588 427 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 SOX11P35716 441 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 DEUP1Q05D60 604 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 ACAP1Q15027 740 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 LRRC23Q53EV4 343 aaPredicted RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 DEFB132Q7Z7B7 95 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 RYBPQ8N488 228 aaPredicted RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 ENDOVQ8N8Q3 282 aaKnown RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 REPS2Q8NFH8 660 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 OR52K1Q8NGK4 314 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 CLEC4CQ8WTT0 213 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 AZIN2Q96A70 460 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 SKA1Q96BD8 255 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 DCPSQ96C86 337 aaKnown RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 KCNK16Q96T55 309 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 MRPL45Q9BRJ2 306 aaKnown RBP12.21□□□□□ -0.45
MSH6-204ENST00000445503 KLHL4Q9C0H6 718 aa12.21□□□□□ -0.45
MSH6-204ENST00000445503 EEF2KO00418 725 aaKnown RBP12.21□□□□□ -0.46
MSH6-204ENST00000445503 B4GALT4O60513 344 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 MT-CO1P00395 513 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 SRGAP2BP0DMP2 458 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 ACAT1P24752 427 aaKnown RBP12.21□□□□□ -0.46
MSH6-204ENST00000445503 DBN1Q16643 649 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 PPP2R3CQ969Q6 453 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 PTCD3Q96EY7 689 aaKnown RBP12.21□□□□□ -0.46
MSH6-204ENST00000445503 PGLYRP2Q96PD5 576 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 XYLT2Q9H1B5 865 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 IARS2Q9NSE4 1012 aaKnown RBP12.21□□□□□ -0.46
MSH6-204ENST00000445503 BCAP29Q9UHQ4 241 aa12.21□□□□□ -0.46
MSH6-204ENST00000445503 SERPINA6P08185 405 aa12.2□□□□□ -0.46
MSH6-204ENST00000445503 GSTT1P30711 240 aa12.2□□□□□ -0.46
MSH6-204ENST00000445503 CLDN10P78369 228 aa12.2□□□□□ -0.46
MSH6-204ENST00000445503 FLOT2Q14254 428 aa12.2□□□□□ -0.46
MSH6-204ENST00000445503 KCNJ11Q14654 390 aa12.2□□□□□ -0.46
MSH6-204ENST00000445503 DPP9Q86TI2 863 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms