RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 KIFC3Q9BVG8 833 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 DDX56Q9NY93 547 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 SORCS3Q9UPU3 1222 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 PCDHB4Q9Y5E5 795 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 PCDHGA4Q9Y5G9 962 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 TMEM150BA6NC51 233 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 CYB561D2O14569 222 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 CASQ2O14958 399 aaPredicted RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 DHX15O43143 795 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 PEX1O43933 1283 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 CSDE1O75534 798 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 ASGR1P07306 291 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 MMP3P08254 477 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 CDK4P11802 303 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 ACO1P21399 889 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 MRPS5P82675 430 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 PURAQ00577 322 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 WASHC5Q12768 1159 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 CYLC2Q14093 348 aaPredicted RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 FSCN1Q16658 493 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 HSDL1Q3SXM5 330 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 NADK2Q4G0N4 442 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 CELF3Q5SZQ8 465 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 FAM102BQ5T8I3 360 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 C1orf53Q5VUE5 145 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 SPOPLQ6IQ16 392 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 SLC39A4Q6P5W5 647 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 MAP4K3Q8IVH8 894 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 POU5F2Q8N7G0 328 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 HIPK4Q8NE63 616 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 ZNF516Q92618 1163 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 GCNAQ96QF7 691 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 MXRA8Q9BRK3 442 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 C20orf27Q9GZN8 174 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 MAD1L1Q9Y6D9 718 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 TTLL13PA6NNM8 815 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 SNNO75324 88 aaPredicted RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 FDFT1P37268 417 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 ADARP55265 1226 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 BASP1P80723 227 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 OGDHQ02218 1023 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 TTLL4Q14679 1199 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 TLR1Q15399 786 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 PGM2L1Q6PCE3 622 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 TMEM270Q6UE05 265 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 SLC26A11Q86WA9 606 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 MARVELD2Q8N4S9 558 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 METTL25Q8N6Q8 603 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 TMEM161BQ8NDZ6 487 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 GBF1Q92538 1859 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 CCDC124Q96CT7 223 aaKnown RBP8.84□□□□□ -0.99
HPS4-206ENST00000439453 MCEEQ96PE7 176 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 DTNAQ9Y4J8 743 aa8.84□□□□□ -0.99
HPS4-206ENST00000439453 REV3LO60673 3130 aa8.83□□□□□ -1
HPS4-206ENST00000439453 EYSQ5T1H1 3165 aa8.83□□□□□ -1
HPS4-206ENST00000439453 DYNC1LI2O43237 492 aaPredicted RBP8.83□□□□□ -1
HPS4-206ENST00000439453 SNRPAP09012 282 aaKnown RBP8.83□□□□□ -1
HPS4-206ENST00000439453 SULT2A1Q06520 285 aa8.83□□□□□ -1
HPS4-206ENST00000439453 PLA2G4FQ68DD2 849 aa8.83□□□□□ -1
HPS4-206ENST00000439453 LMBRD2Q68DH5 695 aaPredicted RBP8.83□□□□□ -1
HPS4-206ENST00000439453 C15orf39Q6ZRI6 1047 aa8.83□□□□□ -1
HPS4-206ENST00000439453 TRMT1LQ7Z2T5 733 aaKnown RBP8.83□□□□□ -1
HPS4-206ENST00000439453 UNC45BQ8IWX7 931 aa8.83□□□□□ -1
HPS4-206ENST00000439453 CTAGE3PQ8IX95 158 aa8.83□□□□□ -1
HPS4-206ENST00000439453 PPM1NQ8N819 430 aa8.83□□□□□ -1
HPS4-206ENST00000439453 ABTB1Q969K4 478 aaPredicted RBP8.83□□□□□ -1
HPS4-206ENST00000439453 GPRASP2Q96D09 838 aa8.83□□□□□ -1
HPS4-206ENST00000439453 SLC13A1Q9BZW2 595 aa8.83□□□□□ -1
HPS4-206ENST00000439453 CDH22Q9UJ99 828 aa8.83□□□□□ -1
HPS4-206ENST00000439453 LZTS1Q9Y250 596 aa8.83□□□□□ -1
HPS4-206ENST00000439453 INPP5FQ9Y2H2 1132 aa8.83□□□□□ -1
HPS4-206ENST00000439453 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.83□□□□□ -1
HPS4-206ENST00000439453 CAPN8A6NHC0 703 aa8.83□□□□□ -1
HPS4-206ENST00000439453 DENRO43583 198 aaKnown RBP8.83□□□□□ -1
HPS4-206ENST00000439453 KRT37O76014 449 aa8.83□□□□□ -1
HPS4-206ENST00000439453 HLA-DRAP01903 254 aa8.83□□□□□ -1
HPS4-206ENST00000439453 PMLP29590 882 aa8.83□□□□□ -1
HPS4-206ENST00000439453 YWHABP31946 246 aaKnown RBP8.83□□□□□ -1
HPS4-206ENST00000439453 QARSP47897 775 aaKnown RBP8.83□□□□□ -1
HPS4-206ENST00000439453 COPAP53621 1224 aa8.83□□□□□ -1
HPS4-206ENST00000439453 HSP90AA5PQ58FG0 334 aa8.83□□□□□ -1
HPS4-206ENST00000439453 RABGAP1LQ5R372 815 aa8.83□□□□□ -1
HPS4-206ENST00000439453 DCUN1D2Q6PH85 259 aa8.83□□□□□ -1
HPS4-206ENST00000439453 SLC39A5Q6ZMH5 540 aa8.83□□□□□ -1
HPS4-206ENST00000439453 DENND5BQ6ZUT9 1274 aa8.83□□□□□ -1
HPS4-206ENST00000439453 GPD1LQ8N335 351 aa8.83□□□□□ -1
HPS4-206ENST00000439453 OR6J1Q8NGC5 347 aa8.83□□□□□ -1
HPS4-206ENST00000439453 ZFP28Q8NHY6 868 aa8.83□□□□□ -1
HPS4-206ENST00000439453 PPTC7Q8NI37 304 aa8.83□□□□□ -1
HPS4-206ENST00000439453 ACTRT2Q8TDY3 377 aa8.83□□□□□ -1
HPS4-206ENST00000439453 RBM38Q9H0Z9 239 aaKnown RBP8.83□□□□□ -1
HPS4-206ENST00000439453 TIMMDC1Q9NPL8 285 aa8.83□□□□□ -1
HPS4-206ENST00000439453 POMPQ9Y244 141 aa8.83□□□□□ -1
HPS4-206ENST00000439453 TEX264Q9Y6I9 313 aa8.83□□□□□ -1
HPS4-206ENST00000439453 SF3B1O75533 1304 aaKnown RBP eCLIP8.83□□□□□ -11e-7■■■■■ 66.8
HPS4-206ENST00000439453 A0A0B4J269 797 aa8.83□□□□□ -1
HPS4-206ENST00000439453 MOXD2PA6NHM9 499 aa8.83□□□□□ -1
HPS4-206ENST00000439453 C3orf70A6NLC5 250 aaPredicted RBP8.83□□□□□ -1
HPS4-206ENST00000439453 CST8O60676 142 aa8.83□□□□□ -1
HPS4-206ENST00000439453 SPAG6O75602 509 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms