RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 EPS15L1Q9UBC2 864 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 VANGL2Q9ULK5 521 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 NOVA2Q9UNW9 492 aaKnown RBP13.31□□□□□ -0.28
PTCH1-207ENST00000429896 SLC11A1P49279 550 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 GYS2P54840 703 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 TAF10Q12962 218 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 TTC17Q96AE7 1141 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 SUSD3Q96L08 255 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 XPO7Q9UIA9 1087 aaKnown RBP13.31□□□□□ -0.28
PTCH1-207ENST00000429896 PKP3Q9Y446 797 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 C8AP07357 584 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 STIP1P31948 543 aaKnown RBP13.31□□□□□ -0.28
PTCH1-207ENST00000429896 NUMBP49757 651 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 ARHGDIAP52565 204 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 HIF1AQ16665 826 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 PHF13Q86YI8 300 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-207ENST00000429896 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-207ENST00000429896 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-207ENST00000429896 A0A1W2PQH9 124 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 SPTLC1O15269 473 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 KRT38O76015 456 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 SUN1O94901 812 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 ANKRD20A4Q4UJ75 823 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 ANKRD20A8PQ5CZ79 823 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 ANKRD20A2Q5SQ80 823 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 ANKRD20A1Q5TYW2 823 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 GSPT2Q8IYD1 628 aaKnown RBP13.31□□□□□ -0.28
PTCH1-207ENST00000429896 CCDC197Q8NCU1 140 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 SPATA4Q8NEY3 305 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 LHX5Q9H2C1 402 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 DPEP3Q9H4B8 488 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 MID2Q9UJV3 735 aa13.31□□□□□ -0.28
PTCH1-207ENST00000429896 MYH7P12883 1935 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 MAP3K7O43318 606 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 FGF18O76093 207 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 GATMP50440 423 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 SLC9A5Q14940 896 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 RAP1GAP2Q684P5 730 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TTC8Q8TAM2 541 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 FAXDC2Q96IV6 333 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 CELF6Q96J87 481 aaKnown RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 GTSE1Q9NYZ3 720 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 AAR2Q9Y312 384 aaKnown RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 PRR23AA6NEV1 266 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 RASGRF2O14827 1237 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TBC1D4O60343 1298 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TADA3O75528 432 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 GJB6O95452 261 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 SYTL3Q4VX76 610 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 DSG4Q86SJ6 1040 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 SPATS2Q86XZ4 545 aaKnown RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 COLGALT1Q8NBJ5 622 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TRPV1Q8NER1 839 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TRIM4Q9C037 500 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 ZNF143P52747 638 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 FMO1Q01740 532 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 MAMLD1Q13495 774 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 DNAJC6O75061 913 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 ADH1CP00326 375 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 EN2P19622 333 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 PPP3CCP48454 512 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 SLC5A3P53794 718 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TMED1Q13445 227 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 CCDC33Q8N5R6 958 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 HJURPQ8NCD3 748 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 HNRNPABQ99729 332 aaKnown RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TRAIPQ9BWF2 469 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 RALBP11234 206 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TAC1P20366 129 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 TBX2Q13207 712 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 CMTR2Q8IYT2 770 aaKnown RBP13.3□□□□□ -0.28
PTCH1-207ENST00000429896 PCED1BQ96HM7 432 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 KREMEN1Q96MU8 473 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 FAM161BQ96MY7 647 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 CLDND1Q9NY35 253 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 GMIPQ9P107 970 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 CFAP97Q9P2B7 532 aa13.3□□□□□ -0.28
PTCH1-207ENST00000429896 FGF10O15520 208 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-207ENST00000429896 LZTS3O60299 673 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-207ENST00000429896 ANP32DO95626 131 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 MIPP30301 263 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 ERFP50548 548 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 EIF3BP55884 814 aaKnown RBP13.29□□□□□ -0.28
PTCH1-207ENST00000429896 NOMO3P69849 1222 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 RBBP7Q16576 425 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 CPA6Q8N4T0 437 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 PMPCBO75439 489 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 B3GALT6Q96L58 329 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 BRD9Q9H8M2 597 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 SMAPO00193 183 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 TBL1XO60907 577 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 EMBQ6PCB8 327 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 ALG13Q9NP73 1137 aaKnown RBP13.29□□□□□ -0.28
PTCH1-207ENST00000429896 A0A087WUV0 522 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-207ENST00000429896 IGKV6-21A0A0C4DH24 114 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 SNX2O60749 519 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 ADAMTS4O75173 837 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 RAD23BP54727 409 aa13.29□□□□□ -0.28
PTCH1-207ENST00000429896 LBRQ14739 615 aaKnown RBP13.29□□□□□ -0.28
PTCH1-207ENST00000429896 DIS3LQ8TF46 1054 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms