RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 DNAAF3Q8N9W5 541 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 SHCBP1Q8NEM2 672 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 SPATA22Q8NHS9 363 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 PCED1BQ96HM7 432 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 CYP2S1Q96SQ9 504 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 TSPYL2Q9H2G4 693 aaPredicted RBP8.65□□□□□ -1.02
CD44-208ENST00000428726 PRDM12Q9H4Q4 367 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 NRDE2Q9H7Z3 1164 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 TMLHEQ9NVH6 421 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 GEMIN8Q9NWZ8 242 aaKnown RBP8.65□□□□□ -1.02
CD44-208ENST00000428726 MPP6Q9NZW5 540 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 WDR35Q9P2L0 1181 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 APOC4-APOC2K7ER74 178 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 DFFAO00273 331 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 C2CD2LO14523 706 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 LPXNO60711 386 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 APOC2P02655 101 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 PDHA1P08559 390 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 GRM5P41594 1212 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 CCR10P46092 362 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 PRKCZQ05513 592 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 MAP2K5Q13163 448 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 PCSK7Q16549 785 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 DDR2Q16832 855 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 UBXN11Q5T124 520 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 ZNF280DQ6N043 979 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 RSPH3Q86UC2 560 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 RNF135Q8IUD6 432 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 CMASQ8NFW8 434 aaPredicted RBP8.65□□□□□ -1.02
CD44-208ENST00000428726 OR52K1Q8NGK4 314 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 FNIP1Q8TF40 1166 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 CSPG4P5Q96PW8 444 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 MYLK2Q9H1R3 596 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 USP29Q9HBJ7 922 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 PCDH9Q9HC56 1237 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 CRTAC1Q9NQ79 661 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 DTLQ9NZJ0 730 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 EFR3BQ9Y2G0 817 aa8.65□□□□□ -1.02
CD44-208ENST00000428726 USP15Q9Y4E8 981 aaPredicted RBP8.65□□□□□ -1.02
CD44-208ENST00000428726 ANK1P16157 1881 aa8.65□□□□□ -1.03
CD44-208ENST00000428726 ENO4A6NNW6 628 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 TRDMT1O14717 391 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 B4GALT3O60512 393 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 GJB3O75712 270 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 PTPN1P18031 435 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 ATICP31939 592 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 L1CAMP32004 1257 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 GLRBP48167 497 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 TAF6P49848 677 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ZBTB16Q05516 673 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 DEUP1Q05D60 604 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 STAT4Q14765 748 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 KYAT1Q16773 422 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 TIGD5Q53EQ6 642 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 HEATR6Q6AI08 1181 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 PAQR9Q6ZVX9 377 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 OTOP3Q7RTS5 596 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 CIR1Q86X95 450 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 ANKLE1Q8NAG6 615 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 HIPK4Q8NE63 616 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ACVR1CQ8NER5 493 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ST13P5Q8NFI4 369 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 TRIB2Q92519 343 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 SGF29Q96ES7 293 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 NSRP1Q9H0G5 558 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 TRPV6Q9H1D0 765 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 NDFIP2Q9NV92 336 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ABI2Q9NYB9 513 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 ITGA11Q9UKX5 1188 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ZMYND8Q9ULU4 1186 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 SLC27A5Q9Y2P5 690 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ZMPSTE24O75844 475 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 MT-CYBP00156 380 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 CHRNA1P02708 482 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ITGAVP06756 1048 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ARSAP15289 507 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 CD1EP15812 388 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 SP100P23497 879 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 GRK4P32298 578 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ATN1P54259 1190 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 GSCP56915 257 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 GEMIN4P57678 1058 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 MAXP61244 160 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 YWHAZP63104 245 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 ZNF460Q14592 562 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 VWA5B1Q5TIE3 1220 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 OTOAQ7RTW8 1153 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 CAND1Q86VP6 1230 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 MIB1Q86YT6 1006 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 SNX31Q8N9S9 440 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 COLGALT1Q8NBJ5 622 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 NKD2Q969F2 451 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 AGAP2Q99490 1192 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ADAM2Q99965 735 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 IQCGQ9H095 443 aaKnown RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 VPS11Q9H270 941 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 ACTR5Q9H9F9 607 aaPredicted RBP8.64□□□□□ -1.03
CD44-208ENST00000428726 RSAD1Q9HA92 442 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 CYP3A43Q9HB55 503 aa8.64□□□□□ -1.03
CD44-208ENST00000428726 KLHL8Q9P2G9 620 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms